| Chain sequence(s) |
A: GTPSADQVRYNYTELPNGEYCYTPRRRCTSADQCCRPYDTTAAFHGCGRIWPKDKREKVDRCYICNNEKTLCTSVM
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:24)
[INFO] Main: Simulation completed successfully. (00:01:24)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -0.5524 | |
| 2 | T | A | -0.3828 | |
| 3 | P | A | -1.0687 | |
| 4 | S | A | -0.9066 | |
| 5 | A | A | -1.0413 | |
| 6 | D | A | -2.0987 | |
| 7 | Q | A | -1.8025 | |
| 8 | V | A | -1.0721 | |
| 9 | R | A | -1.3026 | |
| 10 | Y | A | -0.0922 | |
| 11 | N | A | 0.0848 | |
| 12 | Y | A | 1.1312 | |
| 13 | T | A | -0.2370 | |
| 14 | E | A | -2.0324 | |
| 15 | L | A | 0.0000 | |
| 16 | P | A | -1.8890 | |
| 17 | N | A | -2.3183 | |
| 18 | G | A | -2.2300 | |
| 19 | E | A | -2.4719 | |
| 20 | Y | A | -0.7584 | |
| 21 | C | A | -0.4692 | |
| 22 | Y | A | -0.5340 | |
| 23 | T | A | -0.4328 | |
| 24 | P | A | -0.8873 | |
| 25 | R | A | -1.4829 | |
| 26 | R | A | -2.9371 | |
| 27 | R | A | -3.1971 | |
| 28 | C | A | -1.8494 | |
| 29 | T | A | -1.1301 | |
| 30 | S | A | -1.0671 | |
| 31 | A | A | -1.1245 | |
| 32 | D | A | -1.9676 | |
| 33 | Q | A | -1.5091 | |
| 34 | C | A | 0.0000 | |
| 35 | C | A | 0.0000 | |
| 36 | R | A | -0.5334 | |
| 37 | P | A | 0.0000 | |
| 38 | Y | A | -0.2689 | |
| 39 | D | A | -1.7475 | |
| 40 | T | A | -0.8338 | |
| 41 | T | A | -0.6787 | |
| 42 | A | A | -1.3159 | |
| 43 | A | A | 0.0000 | |
| 44 | F | A | -0.2238 | |
| 45 | H | A | -0.2606 | |
| 46 | G | A | 0.0000 | |
| 47 | C | A | -1.3279 | |
| 48 | G | A | -1.7889 | |
| 49 | R | A | -2.6720 | |
| 50 | I | A | -0.4053 | |
| 51 | W | A | -0.7335 | |
| 52 | P | A | -2.2367 | |
| 53 | K | A | -2.8786 | |
| 54 | D | A | 0.0000 | |
| 55 | K | A | -4.5884 | |
| 56 | R | A | -4.6155 | |
| 57 | E | A | -4.5444 | |
| 58 | K | A | -4.4384 | |
| 59 | V | A | -3.3864 | |
| 60 | D | A | -3.0085 | |
| 61 | R | A | -2.6483 | |
| 62 | C | A | 0.0000 | |
| 63 | Y | A | -0.5933 | |
| 64 | I | A | 0.0000 | |
| 65 | C | A | 0.0000 | |
| 66 | N | A | 0.0000 | |
| 67 | N | A | -2.5629 | |
| 68 | E | A | -2.7665 | |
| 69 | K | A | -2.5744 | |
| 70 | T | A | -1.3536 | |
| 71 | L | A | -0.6571 | |
| 72 | C | A | -0.1871 | |
| 73 | T | A | 0.1836 | |
| 74 | S | A | 0.5010 | |
| 75 | V | A | 0.4479 | |
| 76 | M | A | 0.9447 |