| Chain sequence(s) |
A: LPAPKNLVVSEVTEDSARLSWTAPDAAFDSFLIQYQESEKVGEAIVLTVPGSERSYDLTGLKPGTEYTVSIYGVKGGHRSNPLSAIFTT
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:37)
[INFO] Main: Simulation completed successfully. (00:01:38)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | L | A | 0.1931 | |
| 2 | P | A | -0.3379 | |
| 3 | A | A | -0.8988 | |
| 4 | P | A | 0.0000 | |
| 5 | K | A | -1.8523 | |
| 6 | N | A | -1.4300 | |
| 7 | L | A | -0.1323 | |
| 8 | V | A | 1.1706 | |
| 9 | V | A | 0.5927 | |
| 10 | S | A | -0.6994 | |
| 11 | E | A | -2.0813 | |
| 12 | V | A | -1.0761 | |
| 13 | T | A | -1.8065 | |
| 14 | E | A | -3.0359 | |
| 15 | D | A | -2.6849 | |
| 16 | S | A | -2.1101 | |
| 17 | A | A | 0.0000 | |
| 18 | R | A | -1.4692 | |
| 19 | L | A | 0.0000 | |
| 20 | S | A | -0.4015 | |
| 21 | W | A | 0.0000 | |
| 22 | T | A | -1.2325 | |
| 23 | A | A | -1.3624 | |
| 24 | P | A | -1.3313 | |
| 25 | D | A | -2.2191 | |
| 26 | A | A | -1.4376 | |
| 27 | A | A | -1.0353 | |
| 28 | F | A | 0.0000 | |
| 29 | D | A | -2.5793 | |
| 30 | S | A | -1.5889 | |
| 31 | F | A | 0.0000 | |
| 32 | L | A | 0.2632 | |
| 33 | I | A | 0.0000 | |
| 34 | Q | A | 0.5025 | |
| 35 | Y | A | 0.3962 | |
| 36 | Q | A | -0.8229 | |
| 37 | E | A | -1.8184 | |
| 38 | S | A | -1.5039 | |
| 39 | E | A | -2.7126 | |
| 40 | K | A | -2.3636 | |
| 41 | V | A | -0.0842 | |
| 42 | G | A | -1.0693 | |
| 43 | E | A | -1.4889 | |
| 44 | A | A | -0.2600 | |
| 45 | I | A | 0.9426 | |
| 46 | V | A | 1.7369 | |
| 47 | L | A | 1.2168 | |
| 48 | T | A | 0.3985 | |
| 49 | V | A | 0.0000 | |
| 50 | P | A | -1.0796 | |
| 51 | G | A | 0.0000 | |
| 52 | S | A | -1.5692 | |
| 53 | E | A | -1.4674 | |
| 54 | R | A | -0.8922 | |
| 55 | S | A | -0.6521 | |
| 56 | Y | A | -0.7647 | |
| 57 | D | A | -1.7705 | |
| 58 | L | A | 0.0000 | |
| 59 | T | A | -1.3746 | |
| 60 | G | A | -1.4832 | |
| 61 | L | A | 0.0000 | |
| 62 | K | A | -3.0144 | |
| 63 | P | A | -2.6326 | |
| 64 | G | A | -1.8782 | |
| 65 | T | A | -2.4138 | |
| 66 | E | A | -1.9640 | |
| 67 | Y | A | 0.0000 | |
| 68 | T | A | 0.0367 | |
| 69 | V | A | 0.0000 | |
| 70 | S | A | 0.0000 | |
| 71 | I | A | 0.0000 | |
| 72 | Y | A | 0.0000 | |
| 73 | G | A | 0.0000 | |
| 74 | V | A | -1.8995 | |
| 75 | K | A | -2.2859 | |
| 76 | G | A | -1.9957 | |
| 77 | G | A | -2.0490 | |
| 78 | H | A | -2.4190 | |
| 79 | R | A | -2.6339 | |
| 80 | S | A | 0.0000 | |
| 81 | N | A | -1.4897 | |
| 82 | P | A | -1.1391 | |
| 83 | L | A | -0.6824 | |
| 84 | S | A | 0.0922 | |
| 85 | A | A | 1.1982 | |
| 86 | I | A | 1.8286 | |
| 87 | F | A | 0.0000 | |
| 88 | T | A | -0.7942 | |
| 89 | T | A | -1.9137 |