Project name: design3

Status: done

Started: 2026-05-21 06:30:23
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Chain sequence(s) A: MRMGGVVGSGGTLVGILEVGRELGIGAERVYGGGRQPAEEVLAAARAAGVPRAGHTGKGVAEALKATPLEEVRVVLTSDVASDPEKDFPVLEALAKAAGAELIVQPYDAETRPLVRTDPARTRRLFFDEDRAAAEALLRRVVAA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:09)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:10)
Show buried residues

Minimal score value
-4.1826
Maximal score value
0.9254
Average score
-1.251
Total score value
-180.1412

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.4823
2 R A -0.9316
3 M A 0.0000
4 G A -1.0862
5 G A 0.0000
6 V A 0.0000
7 V A 0.0000
8 G A 0.0000
9 S A -0.6479
10 G A 0.0000
11 G A -0.9399
12 T A -0.3315
13 L A 0.0000
14 V A 0.0000
15 G A 0.0000
16 I A 0.0000
17 L A 0.0000
18 E A -2.3329
19 V A 0.0000
20 G A 0.0000
21 R A -3.2385
22 E A -2.7833
23 L A -1.1042
24 G A -1.3270
25 I A -1.0631
26 G A 0.0000
27 A A 0.0000
28 E A -2.2232
29 R A -2.1506
30 V A 0.0000
31 Y A -0.1930
32 G A 0.0000
33 G A 0.0000
34 G A -2.0375
35 R A -2.7985
36 Q A -2.2552
37 P A -1.7570
38 A A -1.7003
39 E A -2.5084
40 E A -2.5805
41 V A 0.0000
42 L A -1.4153
43 A A -1.6131
44 A A 0.0000
45 A A 0.0000
46 R A -2.4725
47 A A -1.7054
48 A A -2.0958
49 G A -1.9130
50 V A 0.0000
51 P A -1.9773
52 R A -2.6656
53 A A -1.4481
54 G A -0.6620
55 H A -1.0866
56 T A -1.2489
57 G A -1.9760
58 K A -2.6118
59 G A -1.8855
60 V A -1.1262
61 A A -1.2801
62 E A -2.3035
63 A A 0.0000
64 L A 0.0000
65 K A -1.9367
66 A A -1.0626
67 T A -1.1246
68 P A -1.0836
69 L A -1.4879
70 E A -2.2559
71 E A -2.0140
72 V A 0.0000
73 R A -1.7808
74 V A 0.0000
75 V A 0.0000
76 L A 0.0000
77 T A 0.0000
78 S A 0.0000
79 D A -0.2056
80 V A -0.2174
81 A A -0.8166
82 S A -0.9725
83 D A -1.8436
84 P A -1.9614
85 E A -2.9794
86 K A -2.9736
87 D A -2.1570
88 F A -1.1912
89 P A -1.0673
90 V A -0.8321
91 L A 0.0000
92 E A -1.0311
93 A A -0.6752
94 L A -0.8305
95 A A 0.0000
96 K A -1.9903
97 A A -1.1384
98 A A 0.0000
99 G A -1.7701
100 A A -1.8575
101 E A -1.6415
102 L A -0.4431
103 I A 0.0000
104 V A 0.9254
105 Q A 0.0580
106 P A -0.5537
107 Y A -1.2532
108 D A -2.5450
109 A A -1.9656
110 E A -2.5555
111 T A -2.0210
112 R A -2.0587
113 P A -1.5785
114 L A -1.4973
115 V A -1.5545
116 R A -2.4802
117 T A -1.8370
118 D A -1.9904
119 P A -2.1238
120 A A -1.6576
121 R A -2.5679
122 T A -2.1924
123 R A -2.6343
124 R A -3.7202
125 L A -2.3908
126 F A -2.0905
127 F A 0.0000
128 D A -4.1826
129 E A -3.9077
130 D A -3.3009
131 R A -2.9506
132 A A -1.4753
133 A A -1.2001
134 A A 0.0000
135 E A -1.7565
136 A A -1.5018
137 L A 0.0000
138 L A 0.0000
139 R A -2.7835
140 R A -2.8722
141 V A 0.0000
142 V A -1.1279
143 A A -1.3429
144 A A -1.1183
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Laboratory of Theory of Biopolymers 2018