Project name: sol_323_1st

Status: done

Started: 2024-06-18 22:33:49
Settings
Chain sequence(s) A: KFKLPEDFGKRPSDLRLSVLLVEMLRDILLRTGCKLSREEIEKVKADPTVIDLALKIRFEEAPKLAKELAEELRLKNIEALALLLCGASPTGNLALVYSERVDANLESVLVIWFEDNRYAREHIPELIKKYSEGIYPGDLTDKVPYKGIEISLELVKKPIEEGIKIREEDPSLLEPLLKELEEKVKRLREEVKRLSEENVGDTIKYSLSPKIEEAARRFPRLLYEKGYEAAKKAGLSEKDIKGIALMAASRNVQLCSTILNVAFPLEVIGEVFFFPLILMRSSEEFFEEVVKELKEKEEALK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:07:59)
[INFO]       Main:     Simulation completed successfully.                                          (00:08:00)
Show buried residues

Minimal score value
-4.9799
Maximal score value
1.2774
Average score
-1.3687
Total score value
-413.3401

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -1.8976
2 F A -1.4191
3 K A -2.2447
4 L A -1.1997
5 P A -1.4957
6 E A -3.0593
7 D A -3.2583
8 F A -2.0466
9 G A -1.6755
10 K A -2.5940
11 R A -2.0265
12 P A -1.0844
13 S A -0.9761
14 D A -0.9414
15 L A 0.3926
16 R A -0.6399
17 L A -0.1924
18 S A 0.7206
19 V A 1.2774
20 L A 0.2678
21 L A 0.7111
22 V A 0.7478
23 E A -0.8924
24 M A -0.9682
25 L A 0.0008
26 R A -1.3456
27 D A -1.3419
28 I A -0.6537
29 L A 0.0000
30 L A -1.2173
31 R A -1.4678
32 T A 0.0000
33 G A 0.0000
34 C A 0.0000
35 K A -1.3406
36 L A 0.0000
37 S A -2.8904
38 R A -3.8721
39 E A -4.1981
40 E A -4.2047
41 I A 0.0000
42 E A -4.7750
43 K A -4.5175
44 V A 0.0000
45 K A -3.4863
46 A A -2.4629
47 D A -2.3567
48 P A -1.7063
49 T A -1.0837
50 V A 0.0000
51 I A -1.4147
52 D A -2.1187
53 L A -0.9541
54 A A 0.0000
55 L A 0.0000
56 K A -1.9569
57 I A 0.0000
58 R A 0.0000
59 F A 0.0000
60 E A -2.8298
61 E A -2.5099
62 A A 0.0000
63 P A 0.0000
64 K A -2.6718
65 L A -1.9745
66 A A 0.0000
67 K A -2.3886
68 E A -3.5607
69 L A 0.0000
70 A A 0.0000
71 E A -4.1521
72 E A -3.7841
73 L A -2.9039
74 R A -3.8351
75 L A -2.7978
76 K A -2.8688
77 N A -2.0699
78 I A -0.5156
79 E A 0.0000
80 A A 0.0000
81 L A 0.0000
82 A A 0.0000
83 L A 0.0000
84 L A 0.0000
85 L A 0.0000
86 C A 0.0000
87 G A 0.0000
88 A A 0.0000
89 S A 0.0000
90 P A 0.0000
91 T A 0.0000
92 G A 0.0000
93 N A -0.3657
94 L A 0.0000
95 A A 0.0000
96 L A 0.0000
97 V A -0.1518
98 Y A 0.0000
99 S A 0.0000
100 E A -2.2934
101 R A -2.2858
102 V A 0.0000
103 D A -2.8439
104 A A 0.0000
105 N A -1.6616
106 L A -1.1012
107 E A -1.7921
108 S A 0.0000
109 V A 0.0000
110 L A 0.0000
111 V A 0.0000
112 I A 0.0000
113 W A 0.0000
114 F A -0.4313
115 E A -1.2354
116 D A 0.0000
117 N A 0.0000
118 R A -1.6047
119 Y A -0.7922
120 A A 0.0000
121 R A -1.3926
122 E A -2.3610
123 H A -1.8382
124 I A 0.0000
125 P A -2.5931
126 E A -3.1694
127 L A 0.0000
128 I A 0.0000
129 K A -3.6700
130 K A -3.4139
131 Y A -2.2026
132 S A 0.0000
133 E A -2.9739
134 G A -1.5079
135 I A -0.9444
136 Y A -0.9811
137 P A -0.9998
138 G A -1.5986
139 D A -2.8761
140 L A 0.0000
141 T A -2.2486
142 D A -2.1374
143 K A -1.2751
144 V A -0.5638
145 P A -0.6489
146 Y A -0.7548
147 K A -1.4067
148 G A -0.7773
149 I A 0.0000
150 E A -1.2401
151 I A 0.0262
152 S A -0.5444
153 L A -1.2367
154 E A -2.0702
155 L A -1.0209
156 V A 0.0000
157 K A -2.5093
158 K A -3.3673
159 P A 0.0000
160 I A 0.0000
161 E A -3.2391
162 E A -3.2043
163 G A 0.0000
164 I A 0.0000
165 K A -4.0241
166 I A -2.9025
167 R A -3.3200
168 E A -4.0716
169 E A -3.8590
170 D A -2.9706
171 P A -2.1730
172 S A -0.9308
173 L A -0.2509
174 L A -1.4910
175 E A -2.1820
176 P A -1.5954
177 L A -1.6484
178 L A -2.5457
179 K A -4.0741
180 E A -4.1500
181 L A 0.0000
182 E A -4.4092
183 E A -4.8565
184 K A -4.5531
185 V A -3.9244
186 K A -4.8403
187 R A -4.8204
188 L A -3.8053
189 R A -4.2506
190 E A -4.6200
191 E A -3.6054
192 V A 0.0000
193 K A -3.7155
194 R A -3.6927
195 L A 0.0000
196 S A -2.5437
197 E A -3.8034
198 E A -3.4346
199 N A 0.0000
200 V A -1.5170
201 G A -2.7331
202 D A -2.6629
203 T A -1.3298
204 I A -0.8889
205 K A -1.6429
206 Y A 0.1527
207 S A 0.0000
208 L A -0.4984
209 S A -0.8225
210 P A -1.0068
211 K A -2.2872
212 I A 0.0000
213 E A -2.2315
214 E A -1.9105
215 A A 0.0000
216 A A 0.0000
217 R A -2.2473
218 R A -1.2068
219 F A 0.0000
220 P A 0.0000
221 R A -1.0425
222 L A -0.7149
223 L A 0.0000
224 Y A 0.0000
225 E A -2.4873
226 K A -2.3302
227 G A 0.0000
228 Y A -2.3253
229 E A -3.5200
230 A A -2.3714
231 A A 0.0000
232 K A -3.5583
233 K A -3.0697
234 A A -1.7280
235 G A -1.9083
236 L A -1.4409
237 S A -1.6267
238 E A -2.6730
239 K A -2.3883
240 D A -1.6971
241 I A 0.0000
242 K A -1.4242
243 G A 0.0000
244 I A 0.0000
245 A A 0.0000
246 L A 0.0000
247 M A 0.0000
248 A A 0.0000
249 A A 0.0000
250 S A 0.0000
251 R A 0.0000
252 N A 0.0000
253 V A 0.0000
254 Q A -1.2327
255 L A 0.0000
256 C A 0.0000
257 S A -0.5547
258 T A -0.5804
259 I A 0.0000
260 L A 0.0000
261 N A -0.7482
262 V A 0.1735
263 A A 0.0000
264 F A 0.0000
265 P A -0.1398
266 L A -0.3772
267 E A -1.1115
268 V A 0.8826
269 I A 0.0000
270 G A -0.6112
271 E A -0.5829
272 V A 0.0000
273 F A 0.0037
274 F A 0.0000
275 F A 0.0000
276 P A 0.0000
277 L A 0.0905
278 I A 0.0000
279 L A 0.0000
280 M A -0.7653
281 R A -1.4117
282 S A -1.8520
283 S A 0.0000
284 E A -2.1507
285 E A -2.9986
286 F A 0.0000
287 F A 0.0000
288 E A -2.6544
289 E A -3.1641
290 V A 0.0000
291 V A 0.0000
292 K A -4.0301
293 E A -4.5443
294 L A -3.8596
295 K A -4.5451
296 E A -4.9799
297 K A -4.7107
298 E A -4.6078
299 E A -4.3078
300 A A -2.3615
301 L A -1.2144
302 K A -2.1689
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Laboratory of Theory of Biopolymers 2018