Project name: RRM

Status: done

Started: 2025-02-25 18:27:17
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Chain sequence(s) A: MGHHHHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:58)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:59)
Show buried residues

Minimal score value
-3.4344
Maximal score value
0.4077
Average score
-1.4387
Total score value
-142.4344

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.2189
2 G A -1.0235
3 H A -1.6934
4 H A -2.3723
5 H A -2.6443
6 H A -2.4120
7 H A -2.6276
8 H A -2.5378
9 S A -1.8663
10 H A -1.9287
11 S A -1.6233
12 D A -2.0527
13 N A -1.9623
14 N A -2.0851
15 T A -0.9334
16 I A 0.0000
17 F A 0.0487
18 V A 0.0000
19 Q A -1.7320
20 G A -2.0832
21 L A 0.0000
22 G A -2.2405
23 E A -3.2629
24 N A -2.5466
25 V A 0.0000
26 T A -1.1145
27 I A -0.9050
28 E A -2.3684
29 S A -1.6276
30 V A 0.0000
31 A A -1.8778
32 D A -2.9449
33 Y A -1.5949
34 F A 0.0000
35 K A -2.3608
36 Q A -1.7841
37 I A -0.2697
38 G A -0.4967
39 I A 0.4077
40 I A 0.0000
41 K A -1.3251
42 T A -1.4024
43 N A -2.2515
44 K A -3.1190
45 K A -2.9144
46 T A -1.9088
47 G A -2.0563
48 Q A -1.8819
49 P A -1.2394
50 M A -0.9305
51 I A 0.0000
52 N A -0.7461
53 L A -0.1208
54 Y A -0.5806
55 T A -1.9278
56 D A -2.9780
57 R A -3.4344
58 E A -3.2329
59 T A -2.4542
60 G A -2.6471
61 K A -3.3090
62 L A -2.4744
63 K A -2.8676
64 G A 0.0000
65 E A -1.1933
66 A A 0.0000
67 T A 0.0000
68 V A 0.0000
69 S A -0.8080
70 F A 0.0000
71 D A -2.3305
72 D A -2.7957
73 P A -2.3217
74 P A -1.6306
75 S A -1.3655
76 A A 0.0000
77 K A -1.7418
78 A A -0.7689
79 A A 0.0000
80 I A -1.0275
81 D A -1.7376
82 W A -0.3582
83 F A 0.0000
84 D A -2.2557
85 G A -2.2312
86 K A -2.3923
87 E A -3.0121
88 F A -1.3651
89 S A -1.3835
90 G A -1.5630
91 N A -2.0560
92 P A -2.4360
93 I A 0.0000
94 K A -2.7438
95 V A 0.0000
96 S A -0.6718
97 F A -0.0714
98 A A 0.0573
99 T A -0.1313
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Laboratory of Theory of Biopolymers 2018