Project name: 6444955b29f46fe

Status: done

Started: 2026-06-22 16:07:39
Settings
Chain sequence(s) B: ALRAALDAVMKELKAFKERHKKEGTPALEALKELIKIAEKAGEAKKALAA
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:32)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:32)
Show buried residues

Minimal score value
-4.8107
Maximal score value
0.9533
Average score
-1.8707
Total score value
-93.5345

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A B -0.3681
2 L B -1.1278
3 R B -2.0531
4 A B -1.0832
5 A B -1.4396
6 L B -1.8097
7 D B -2.2138
8 A B -1.7777
9 V B 0.0000
10 M B -1.0897
11 K B -2.7427
12 E B -2.4290
13 L B -2.1509
14 K B -3.0847
15 A B -2.8000
16 F B 0.0000
17 K B -3.7802
18 E B -4.3074
19 R B -4.8107
20 H B -4.2968
21 K B -4.4924
22 K B -4.6781
23 E B -4.3256
24 G B -2.8925
25 T B -1.9017
26 P B -0.2391
27 A B 0.3645
28 L B 0.9533
29 E B -0.6593
30 A B 0.0000
31 L B 0.9116
32 K B -1.1368
33 E B -1.4287
34 L B -0.3045
35 I B -0.2946
36 K B -2.1677
37 I B 0.0000
38 A B -1.4795
39 E B -3.2472
40 K B -3.2077
41 A B -2.4500
42 G B -3.1638
43 E B -3.7622
44 A B 0.0000
45 K B -3.4103
46 K B -3.0620
47 A B -1.5413
48 L B -1.0987
49 A B -0.9876
50 A B -0.4675
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018