Project name: 4EDW

Status: done

Started: 2026-03-23 03:17:57
Settings
Chain sequence(s) H: QVQLQESGPGLVKPSETLSLTCTVSGFSLIGYDLNWIRQPPGKGLEWIGIIWGDGTTDYNSAVKSRVTISKDTSKNQFSLKLSSVTAADTAVYYCARGGYWYATSYYFDYWGQGTLVTVSSASTKGPSVFPLAPCSTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSNFGTQTYTCNVDHKPSNTKVDKTVER
L: DIQMTQSPSSLSASVGDRVTITCRASQSISNNLNWYQQKPGKAPKLLIYYTSRFHSGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQEHTLPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
V: HRGEFSVCDSVSVWVGDKTTATDIKGKEVMVLGEVNINNSVFKQYFFETKCRDPNVDGCRGIDSKHWNSYCTTTHTFVKALTMDGKQAAWRFIRIDTACVCVLSRK
input PDB
Selected Chain(s) H,L,V
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:30)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:34)
Show buried residues

Minimal score value
-3.4147
Maximal score value
1.5855
Average score
-0.6283
Total score value
-336.1588

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
8 H V -1.8704
9 R V -2.3157
10 G V -1.1147
11 E V -0.4160
12 F V 1.4167
13 S V 1.1411
14 V V 1.2606
15 C V 0.0000
16 D V -0.7419
17 S V -0.5020
18 V V -0.0383
19 S V 0.0000
20 V V 0.8559
21 W V 0.5948
22 V V 0.1018
23 G V -1.0695
24 D V -2.0009
25 K V -1.0662
26 T V -0.5488
27 T V -0.5423
28 A V -0.5429
29 T V -1.1104
30 D V 0.0000
31 I V 0.9490
32 K V -1.4267
33 G V -1.6113
34 K V -2.3047
35 E V -2.3910
36 V V 0.0000
37 M V 0.0310
38 V V 0.0000
39 L V -0.6794
40 G V -1.6293
41 E V -1.6340
42 V V 0.1028
43 N V -0.1804
44 I V 0.7220
45 N V -1.1907
46 N V -1.3309
47 S V 0.4031
48 V V 1.3373
49 F V 1.2652
50 K V -1.5897
51 Q V 0.0000
52 Y V -0.4330
53 F V 0.0000
54 F V 0.7276
55 E V 0.0000
56 T V 0.0000
57 K V -1.0629
58 C V -1.3441
59 R V -2.3742
60 D V -2.7079
61 P V -1.9298
62 N V -1.5316
64 V V -1.3386
65 D V -1.8838
67 G V -0.5728
68 C V 0.0000
69 R V -0.4202
70 G V -0.6003
71 I V -0.7885
72 D V -2.4286
73 S V -2.4940
74 K V -3.0159
75 H V -3.0622
76 W V -2.3851
77 N V -2.2256
78 S V -0.2655
79 Y V 0.9168
80 C V 0.0000
81 T V 0.3145
82 T V -0.4903
83 T V -0.4945
84 H V -0.9363
85 T V -0.0025
86 F V 1.0621
87 V V 0.5736
88 K V -0.1752
89 A V 0.0000
90 L V 0.1705
91 T V 0.0000
92 M V -0.4964
93 D V -1.6150
94 G V -1.8548
95 K V -2.6005
96 Q V -2.2482
97 A V -0.6968
98 A V -0.0972
99 W V 0.9647
100 R V 0.5361
101 F V 1.2240
102 I V 0.0000
103 R V -0.0885
104 I V 0.0000
105 D V -0.8508
106 T V -0.3526
107 A V -0.1800
108 C V 0.0000
109 V V 1.2554
110 C V 1.5380
111 V V 1.5855
112 L V 0.4516
113 S V -1.1933
114 R V -2.9553
115 K V -3.2824
1 D L -2.2255
2 I L 0.0000
3 Q L -2.3274
4 M L 0.0000
5 T L -1.3925
6 Q L 0.0000
7 S L -0.7595
8 P L -0.5172
9 S L -0.7820
10 S L -0.5916
11 L L -0.2656
12 S L -0.6961
13 A L -0.8130
14 S L -0.7239
15 V L 0.2201
16 G L -0.6517
17 D L -1.4959
18 R L -2.2099
19 V L 0.0000
20 T L -0.5851
21 I L 0.0000
22 T L -0.7339
23 C L 0.0000
24 R L -2.4313
25 A L 0.0000
26 S L -1.9802
27 Q L -2.1436
28 S L -1.3825
29 I L 0.0000
30 S L -0.8200
31 N L 0.0000
32 N L -0.5756
33 L L 0.0000
34 N L 0.0000
35 W L 0.0000
36 Y L 0.0000
37 Q L 0.0000
38 Q L -1.2552
39 K L -1.8145
40 P L -1.5265
41 G L -1.8109
42 K L -2.5424
43 A L -1.5566
44 P L 0.0000
45 K L -1.0380
46 L L 0.0000
47 L L 0.0000
48 I L 0.0000
49 Y L 0.0000
50 Y L -0.3303
51 T L 0.0000
52 S L 0.0000
53 R L 0.0000
54 F L 0.2563
55 H L -0.1759
56 S L -0.4447
57 G L -0.5246
58 V L -0.2966
59 P L -0.2875
60 S L -0.3788
61 R L -0.6867
62 F L 0.0000
63 S L -0.3193
64 G L -0.6509
65 S L -1.0608
66 G L -1.2046
67 S L -1.1674
68 G L -1.0590
69 T L -1.5430
70 D L -1.7720
71 F L 0.0000
72 T L -0.6109
73 F L 0.0000
74 T L -0.5797
75 I L 0.0000
76 S L -1.2892
77 S L -1.0597
78 L L 0.0000
79 Q L -0.7539
80 P L -1.4905
81 E L -1.7406
82 D L 0.0000
83 I L 0.0000
84 A L 0.0000
85 T L -0.8331
86 Y L 0.0000
87 Y L 0.0000
88 C L 0.0000
89 Q L 0.0000
90 Q L 0.0000
91 E L -0.4738
92 H L -0.9432
93 T L -0.5068
94 L L -0.1583
95 P L -0.4972
96 Y L 0.0000
97 T L -0.9442
98 F L 0.0000
99 G L 0.0000
100 Q L -1.9200
101 G L 0.0000
102 T L 0.0000
103 K L -1.2568
104 L L 0.0000
105 E L -1.0841
106 I L 0.0000
107 K L -1.1653
108 R L -0.7977
109 T L 0.0921
110 V L 0.9355
111 A L 0.0531
112 A L -0.0297
113 P L 0.0000
114 S L -0.0958
115 V L 0.0000
116 F L -0.0116
117 I L -0.0456
118 F L 0.0000
119 P L -0.2510
120 P L 0.0000
121 S L -1.2398
122 D L -2.5478
123 E L -2.4039
124 Q L 0.0000
125 L L -2.1185
126 K L -2.6824
127 S L -1.6438
128 G L -1.3032
129 T L -0.9409
130 A L 0.0000
131 S L 0.0000
132 V L 0.0000
133 V L 0.0000
134 C L 0.0000
135 L L 0.0000
136 L L 0.0000
137 N L 0.0000
138 N L -1.0056
139 F L 0.0000
140 Y L 0.0000
141 P L -1.7160
142 R L -3.1230
143 E L -3.1021
144 A L -2.0573
145 K L -1.6923
146 V L -0.7766
147 Q L -0.2962
148 W L 0.0000
149 K L -0.4619
150 V L 0.0000
151 D L -2.0021
152 N L -1.5590
153 A L -0.2360
154 L L 0.7859
155 Q L 0.0192
156 S L -0.3858
157 G L -0.8667
158 N L -0.7618
159 S L -1.0897
160 Q L -1.3831
161 E L -1.9669
162 S L -1.0065
163 V L -0.9899
164 T L -0.9800
165 E L -1.8385
166 Q L 0.0000
167 D L -2.1006
168 S L -2.2463
169 K L -2.6564
170 D L -2.0679
171 S L 0.0000
172 T L 0.0000
173 Y L 0.0000
174 S L 0.0000
175 L L 0.0000
176 S L 0.0000
177 S L 0.0000
178 T L -0.6422
179 L L 0.0000
180 T L -0.2794
181 L L -0.5571
182 S L -0.9627
183 K L -2.0048
184 A L -1.7113
185 D L -2.2954
186 Y L 0.0000
187 E L -3.1538
188 K L -3.4147
189 H L -2.9215
190 K L -3.1979
191 V L -1.4467
192 Y L 0.0000
193 A L 0.0000
194 C L 0.0000
195 E L -0.6161
196 V L 0.0000
197 T L -0.9680
198 H L 0.0000
199 Q L -1.4643
200 G L -0.3080
201 L L -0.2004
202 S L -0.4817
203 S L -0.4010
204 P L -0.4321
205 V L 0.0564
206 T L -0.5446
207 K L -0.9997
208 S L -0.7666
209 F L 0.0000
210 N L -1.8391
211 R L -2.3479
212 G L -1.9313
213 E L -2.1988
214 C L -0.7154
1 Q H -1.4503
2 V H -0.7687
3 Q H -1.6560
4 L H 0.0000
5 Q H -1.7229
6 E H 0.0000
7 S H -0.6318
8 G H -0.6463
9 P H -0.5829
10 G H -0.4544
11 L H -0.3894
12 V H 0.0000
13 K H -2.4478
14 P H -1.7338
15 S H -1.7160
16 E H -2.6094
17 T H -1.6337
18 L H 0.0000
19 S H -0.8079
20 L H 0.0000
21 T H -0.7319
22 C H 0.0000
23 T H -1.4381
24 V H 0.0000
25 S H -1.1912
26 G H -1.0344
27 F H -0.3391
28 S H -0.0007
29 L H 0.0000
30 I H 0.2645
31 G H 0.0000
32 Y H 0.5600
33 D H 0.0000
34 L H 0.0000
35 N H 0.0000
36 W H 0.0000
37 I H 0.0000
38 R H 0.0000
39 Q H -0.8129
40 P H -0.9011
41 P H -0.9859
42 G H -1.4635
43 K H -2.3956
44 G H -1.6708
45 L H 0.0000
46 E H -1.0104
47 W H 0.0000
48 I H 0.0000
49 G H 0.0000
50 I H 0.0000
51 I H 0.0000
52 W H 0.0419
53 G H 0.0000
54 D H -0.4648
55 G H -0.6428
56 T H -0.4318
57 T H -0.3799
58 D H -0.5907
59 Y H -0.5509
60 N H -0.7828
61 S H -0.9040
62 A H -0.4873
63 V H 0.0000
64 K H -1.4170
65 S H -0.9581
66 R H -1.0402
67 V H 0.0000
68 T H -0.7152
69 I H 0.0000
70 S H -0.7541
71 K H -1.3668
72 D H -2.1150
73 T H -1.5391
74 S H -1.6934
75 K H -2.6440
76 N H -2.1827
77 Q H -1.9942
78 F H 0.0000
79 S H -0.6871
80 L H 0.0000
81 K H -1.0274
82 L H 0.0000
82A S H -1.1420
82B S H -1.2790
82C V H 0.0000
83 T H -0.7032
84 A H -0.2070
85 A H 0.0573
86 D H 0.0000
87 T H 0.0621
88 A H 0.0000
89 V H 0.1306
90 Y H 0.0000
91 Y H 0.0000
92 C H 0.0000
93 A H 0.0000
94 R H 0.0000
95 G H 0.0000
96 G H 0.0000
97 Y H 0.5588
98 W H 0.5653
99 Y H 0.5945
100 A H 0.3776
100A T H 0.1313
100B S H 0.0000
100C Y H 0.0000
100D Y H 0.0000
100E F H 0.0000
101 D H -0.0186
102 Y H 0.2282
103 W H -0.5375
104 G H 0.0000
105 Q H -1.9600
106 G H -1.0889
107 T H -0.4273
108 L H 0.0430
109 V H 0.0000
110 T H -0.2763
111 V H 0.0000
112 S H -0.7044
113 S H -0.8708
114 A H -0.5383
115 S H -0.6442
116 T H -0.7097
117 K H -1.1602
118 G H -1.3507
119 P H -0.5624
120 S H -0.2268
121 V H 0.0000
122 F H -0.3245
123 P H -0.6462
124 L H 0.0000
125 A H -0.7673
126 P H -0.4932
127 C H -0.5771
128 S H -0.6315
135 T H -0.3614
136 A H -0.4603
137 A H 0.0000
138 L H 0.0000
139 G H 0.0000
140 C H 0.0000
141 L H 0.0000
142 V H 0.0000
143 K H 0.0000
144 D H -0.4716
145 Y H 0.0000
146 F H -0.2408
147 P H 0.0000
148 E H -0.4888
149 P H -0.6734
150 V H -0.6400
151 T H -0.5637
152 V H -0.1883
153 S H -0.5139
154 W H 0.0000
155 N H -0.8591
156 S H -0.8321
157 G H -0.6218
158 A H -0.2845
159 L H -0.0906
160 T H -0.1873
161 S H -0.1784
162 G H -0.2053
163 V H 0.1589
164 H H -0.2992
165 T H -0.0075
166 F H 0.0000
167 P H -0.3388
168 A H 0.1390
169 V H 0.3886
170 L H 1.0954
171 Q H 0.2569
172 S H -0.0810
173 S H -0.2242
174 G H 0.0694
175 L H 0.1700
176 Y H 0.4118
177 S H 0.0000
178 L H 0.0000
179 S H 0.0000
180 S H 0.0000
181 V H 0.0000
182 V H 0.0000
183 T H -0.1500
184 V H 0.0000
185 P H -0.5760
186 S H -0.5541
187 S H -0.6451
188 N H -0.9653
189 F H -1.1279
190 G H -0.7746
191 T H -0.7367
192 Q H -1.3433
193 T H -1.1696
194 Y H 0.0000
195 T H -1.1122
196 C H 0.0000
197 N H -1.4091
198 V H 0.0000
199 D H -1.8900
200 H H 0.0000
201 K H -2.7909
202 P H -1.6274
203 S H -1.7734
204 N H -2.5970
205 T H -2.0284
206 K H -2.6712
207 V H -1.4295
208 D H -2.2512
209 K H -1.4345
210 T H -1.0526
211 V H 0.0000
212 E H -2.8484
213 R H -2.7073
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Laboratory of Theory of Biopolymers 2018