Project name: 1f0n_v2

Status: done

Started: 2025-02-18 00:15:28
Settings
Chain sequence(s) A: SRPGLPVEYLQVPSPSMGRDIKVQFQSGGNNSPAVYLLDGLRAQDDESDWARHTPAFEWYYQSGLSIVMPVGGQSSFYSDWLKPACGKAGCQTYKWETFLTSELPQWLSANRAVKPTGSAAIGLSMAGSSAMILAAYHPQQFIYAGSLSALLDPSQGDGPAFLDKAMGDAGGYKAADMWGPSSDPAWERNDPTQQIPKLVANNTRLWVYCGNGTPNELGGATPAASALEAYLRSSNLKFQDAYNAAGGHNAVFNFPPNGTHSWEYWGAQLNAMKGDLQSSLGAG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:20)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:21)
Show buried residues

Minimal score value
-3.568
Maximal score value
2.3759
Average score
-0.6399
Total score value
-181.7431

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
2 S A -1.4165
3 R A -2.2724
4 P A -1.4261
5 G A -1.0580
6 L A -0.6434
7 P A -0.1576
8 V A 0.1329
9 E A -0.1775
10 Y A 0.0456
11 L A 0.0000
12 Q A -1.3407
13 V A 0.0000
14 P A -1.2914
15 S A 0.0000
16 P A -0.9394
17 S A -0.7004
18 M A 0.0000
19 G A -1.3312
20 R A -1.8415
21 D A -2.1502
22 I A 0.0000
23 K A -1.6040
24 V A 0.0000
25 Q A 0.0000
26 F A 0.0000
27 Q A 0.0000
28 S A -0.8125
29 G A -1.1464
30 G A -1.5936
31 N A -2.3535
32 N A -2.4994
33 S A 0.0000
34 P A 0.0000
35 A A 0.0000
36 V A 0.0000
37 Y A 0.0000
38 L A 0.0000
39 L A 0.0000
40 D A 0.0000
41 G A -0.7569
42 L A -1.1978
43 R A -2.6191
44 A A 0.0000
45 Q A -3.0379
46 D A -3.5680
47 D A -3.2090
48 E A -2.5886
49 S A 0.0000
50 D A -1.7321
51 W A 0.0000
52 A A 0.0000
53 R A -2.2139
54 H A -1.3194
55 T A 0.0000
56 P A -1.1401
57 A A 0.0000
58 F A 0.0000
59 E A -1.2493
60 W A -0.5920
61 Y A 0.0000
62 Y A -0.3159
63 Q A -1.1982
64 S A 0.0000
65 G A -1.0332
66 L A 0.0000
67 S A 0.0000
68 I A 0.0000
69 V A 0.0000
70 M A 0.0000
71 P A 0.0000
72 V A 0.0000
73 G A -2.0335
74 G A 0.0000
75 Q A -1.5936
76 S A 0.0000
77 S A 0.0000
78 F A 0.0000
79 Y A 0.0000
80 S A 0.0000
81 D A -0.6437
82 W A 0.0000
83 L A -0.0031
84 K A -1.6651
85 P A -1.1222
86 A A 0.0000
87 C A -0.7116
88 G A -1.1908
89 K A -1.9132
90 A A -0.8646
91 G A -0.5798
92 C A 0.0301
93 Q A -0.7717
94 T A -0.7719
95 Y A 0.0000
96 K A -0.8258
97 W A 0.0000
98 E A 0.0000
99 T A -0.4239
100 F A 0.0000
101 L A 0.0000
102 T A -0.4001
103 S A -0.6586
104 E A -0.8160
105 L A 0.0000
106 P A 0.0000
107 Q A -1.4949
108 W A -0.6224
109 L A 0.0000
110 S A -1.3943
111 A A -0.7881
112 N A -1.0463
113 R A -1.5711
114 A A -1.7471
115 V A 0.0000
116 K A -2.1946
117 P A -1.3553
118 T A -1.0117
119 G A -0.6383
120 S A 0.0000
121 A A 0.0000
122 A A 0.0000
123 I A 0.0000
124 G A 0.0000
125 L A 0.0000
126 S A -0.1593
127 M A 0.0000
128 A A 0.0000
129 G A 0.0000
130 S A -0.0231
131 S A 0.0000
132 A A 0.0000
133 M A 0.0000
134 I A 0.0000
135 L A 0.0000
136 A A 0.0000
137 A A 0.0000
138 Y A -0.1562
139 H A -0.5373
140 P A -0.9810
141 Q A -1.3891
142 Q A -0.9854
143 F A 0.0000
144 I A -0.3845
145 Y A 0.0000
146 A A 0.0000
147 G A 0.0000
148 S A 0.0000
149 L A 0.0000
150 S A 0.0000
151 A A 0.0000
152 L A 0.1683
153 L A 0.0000
154 D A -1.4654
155 P A 0.0000
156 S A -1.7988
157 Q A -2.2875
158 G A -1.9453
159 D A -2.2668
160 G A 0.0000
161 P A 0.0000
162 A A -1.1692
163 F A -0.7543
164 L A -0.9915
165 D A -1.8948
166 K A -2.4337
167 A A -1.8302
168 M A 0.0000
169 G A -2.3260
170 D A -2.9292
171 A A 0.0000
172 G A -1.7607
173 G A -1.9951
174 Y A 0.0000
175 K A -2.1622
176 A A 0.0000
177 A A -0.9275
178 D A -1.1105
179 M A 0.0000
180 W A 0.0000
181 G A 0.0000
182 P A -0.7852
183 S A -1.2181
184 S A -0.8615
185 D A -1.1621
186 P A -1.1535
187 A A -0.8621
188 W A 0.0000
189 E A -2.1442
190 R A -1.4949
191 N A 0.0000
192 D A 0.0000
193 P A 0.0000
194 T A -1.3388
195 Q A -1.7868
196 Q A 0.0000
197 I A 0.0000
198 P A -1.1003
199 K A -1.4899
200 L A 0.0000
201 V A -1.2811
202 A A -0.9169
203 N A -1.4462
204 N A -1.5935
205 T A 0.0000
206 R A -1.1962
207 L A 0.0000
208 W A 0.0000
209 V A 0.0000
210 Y A 0.0000
211 C A 0.0000
212 G A 0.0000
213 N A -0.4066
214 G A 0.0000
215 T A -0.7228
216 P A -1.3042
217 N A -2.2023
218 E A -2.2807
219 L A -0.9904
220 G A -0.8991
221 G A -0.5553
222 A A -0.5749
223 T A -0.2189
224 P A -0.2132
225 A A 0.0090
226 A A 0.0000
227 S A -0.0254
228 A A 0.3099
229 L A 0.5022
230 E A 0.0000
231 A A 0.0888
232 Y A 0.5759
233 L A 0.0000
234 R A -0.4319
235 S A -0.5647
236 S A -0.9015
237 N A 0.0000
238 L A -0.3483
239 K A -2.2727
240 F A 0.0000
241 Q A -1.1287
242 D A -2.6391
243 A A -1.8200
244 Y A 0.0000
245 N A -2.3962
246 A A -1.2778
247 A A -0.9275
248 G A -1.1276
249 G A -1.7427
250 H A -1.6924
251 N A -1.1770
252 A A -0.0793
253 V A 1.2864
254 F A 2.3759
255 N A 1.0349
256 F A 0.8184
257 P A 0.0589
258 P A -0.5761
259 N A -0.7616
260 G A 0.0000
261 T A 0.0000
262 H A -0.0803
263 S A 0.0903
264 W A 0.1300
265 E A -0.0934
266 Y A 0.0000
267 W A 0.0000
268 G A 0.0000
269 A A -0.1081
270 Q A 0.0000
271 L A 0.0000
272 N A -0.7323
273 A A -0.6908
274 M A 0.0000
275 K A -1.3545
276 G A -1.5971
277 D A -1.9509
278 L A 0.0000
279 Q A -1.3379
280 S A -1.1942
281 S A -0.8594
282 L A -0.5524
283 G A -0.8313
284 A A -0.9856
285 G A -0.8972
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Laboratory of Theory of Biopolymers 2018