| Chain sequence(s) |
A: KLDLKLDLKLDL
C: KLDLKLDLKLDL B: KLDLKLDLKLDL E: KLDLKLDLKLDL D: KLDLKLDLKLDL G: KLDLKLDLKLDL F: KLDLKLDLKLDL I: KLDLKLDLKLDL H: KLDLKLDLKLDL K: KLDLKLDLKLDL J: KLDLKLDLKLDL L: KLDLKLDLKLDL input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:09:39)
[INFO] Main: Simulation completed successfully. (00:09:42)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -1.5158 | |
| 2 | L | A | 0.0672 | |
| 3 | D | A | -1.5626 | |
| 4 | L | A | 0.2088 | |
| 5 | K | A | -1.1399 | |
| 6 | L | A | 0.4873 | |
| 7 | D | A | -1.3195 | |
| 8 | L | A | 0.5199 | |
| 9 | K | A | -1.0836 | |
| 10 | L | A | 0.5168 | |
| 11 | D | A | -0.9220 | |
| 12 | L | A | 0.9683 | |
| 1 | K | B | -1.0526 | |
| 2 | L | B | -0.2253 | |
| 3 | D | B | -1.5179 | |
| 4 | L | B | -0.3285 | |
| 5 | K | B | -1.4860 | |
| 6 | L | B | -0.2982 | |
| 7 | D | B | -1.2558 | |
| 8 | L | B | -0.2415 | |
| 9 | K | B | -1.4495 | |
| 10 | L | B | -0.5243 | |
| 11 | D | B | -1.2965 | |
| 12 | L | B | 0.6966 | |
| 1 | K | C | -1.4963 | |
| 2 | L | C | -0.3885 | |
| 3 | D | C | -1.6165 | |
| 4 | L | C | -0.4015 | |
| 5 | K | C | -1.7038 | |
| 6 | L | C | -0.6351 | |
| 7 | D | C | -1.8706 | |
| 8 | L | C | -0.5227 | |
| 9 | K | C | -1.7245 | |
| 10 | L | C | -0.4010 | |
| 11 | D | C | -1.4601 | |
| 12 | L | C | 0.8068 | |
| 1 | K | D | -1.3546 | |
| 2 | L | D | -0.5584 | |
| 3 | D | D | -1.5723 | |
| 4 | L | D | -0.6025 | |
| 5 | K | D | -1.6452 | |
| 6 | L | D | -0.6517 | |
| 7 | D | D | -1.2596 | |
| 8 | L | D | -0.4255 | |
| 9 | K | D | -1.4789 | |
| 10 | L | D | -0.6779 | |
| 11 | D | D | -1.3210 | |
| 12 | L | D | 0.7222 | |
| 1 | K | E | -1.4479 | |
| 2 | L | E | -0.4790 | |
| 3 | D | E | -1.2703 | |
| 4 | L | E | -0.2036 | |
| 5 | K | E | -1.2647 | |
| 6 | L | E | -0.3909 | |
| 7 | D | E | -1.4489 | |
| 8 | L | E | -0.6854 | |
| 9 | K | E | -2.0337 | |
| 10 | L | E | -0.9565 | |
| 11 | D | E | -1.7812 | |
| 12 | L | E | 0.7309 | |
| 1 | K | F | -1.5415 | |
| 2 | L | F | -0.7791 | |
| 3 | D | F | -1.8497 | |
| 4 | L | F | -0.6800 | |
| 5 | K | F | -1.6117 | |
| 6 | L | F | -0.5011 | |
| 7 | D | F | -1.0769 | |
| 8 | L | F | -0.1952 | |
| 9 | K | F | -1.1283 | |
| 10 | L | F | -0.3928 | |
| 11 | D | F | -1.1602 | |
| 12 | L | F | 0.8162 | |
| 1 | K | G | -1.1654 | |
| 2 | L | G | -0.2449 | |
| 3 | D | G | -1.1361 | |
| 4 | L | G | -0.3596 | |
| 5 | K | G | -1.8031 | |
| 6 | L | G | -0.8341 | |
| 7 | D | G | -1.7183 | |
| 8 | L | G | -0.5813 | |
| 9 | K | G | -1.5578 | |
| 10 | L | G | -0.3751 | |
| 11 | D | G | -1.1880 | |
| 12 | L | G | 1.0283 | |
| 1 | K | H | -1.2894 | |
| 2 | L | H | -0.4367 | |
| 3 | D | H | -1.4968 | |
| 4 | L | H | -0.6589 | |
| 5 | K | H | -2.0501 | |
| 6 | L | H | -1.0342 | |
| 7 | D | H | -1.6963 | |
| 8 | L | H | -0.4729 | |
| 9 | K | H | -1.2911 | |
| 10 | L | H | -0.3721 | |
| 11 | D | H | -1.1576 | |
| 12 | L | H | 0.8093 | |
| 1 | K | I | -1.4599 | |
| 2 | L | I | -0.4931 | |
| 3 | D | I | -1.4386 | |
| 4 | L | I | -0.6179 | |
| 5 | K | I | -2.0747 | |
| 6 | L | I | -0.9486 | |
| 7 | D | I | -1.7619 | |
| 8 | L | I | -0.7117 | |
| 9 | K | I | -1.9887 | |
| 10 | L | I | -0.8762 | |
| 11 | D | I | -1.5470 | |
| 12 | L | I | 0.7163 | |
| 1 | K | J | -1.6148 | |
| 2 | L | J | -0.6414 | |
| 3 | D | J | -1.9056 | |
| 4 | L | J | -0.5678 | |
| 5 | K | J | -1.9104 | |
| 6 | L | J | -0.6680 | |
| 7 | D | J | -1.7839 | |
| 8 | L | J | -0.5336 | |
| 9 | K | J | -1.8466 | |
| 10 | L | J | -0.7013 | |
| 11 | D | J | -1.7174 | |
| 12 | L | J | 0.5210 | |
| 1 | K | K | -1.7663 | |
| 2 | L | K | -0.6402 | |
| 3 | D | K | -1.6466 | |
| 4 | L | K | -0.1508 | |
| 5 | K | K | -1.3788 | |
| 6 | L | K | -0.2077 | |
| 7 | D | K | -1.4596 | |
| 8 | L | K | -0.3833 | |
| 9 | K | K | -1.7343 | |
| 10 | L | K | -0.4875 | |
| 11 | D | K | -1.2401 | |
| 12 | L | K | 0.6752 | |
| 1 | K | L | -1.5007 | |
| 2 | L | L | 0.1433 | |
| 3 | D | L | -1.3817 | |
| 4 | L | L | 0.4429 | |
| 5 | K | L | -1.2419 | |
| 6 | L | L | 0.7082 | |
| 7 | D | L | -0.8557 | |
| 8 | L | L | 0.5799 | |
| 9 | K | L | -1.3244 | |
| 10 | L | L | 0.1916 | |
| 11 | D | L | -1.2154 | |
| 12 | L | L | 0.7896 |