Project name: query_structure

Status: done

Started: 2026-03-17 00:16:11
Settings
Chain sequence(s) A: NFDANMNAINFDANFDANMNAIDNMNDNMNNMNAINFDADNMNNMNAIDNMN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:23)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:24)
Show buried residues

Minimal score value
-3.9385
Maximal score value
0.9061
Average score
-1.4737
Total score value
-76.6347

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -1.1389
2 F A 0.0848
3 D A -1.8167
4 A A -1.2358
5 N A -1.0893
6 M A -0.5818
7 N A -1.1776
8 A A -0.3822
9 I A 0.9061
10 N A -0.4550
11 F A 0.6162
12 D A -0.9760
13 A A -0.8293
14 N A -1.2549
15 F A -0.0427
16 D A -1.9352
17 A A -1.6654
18 N A -2.0093
19 M A -1.5109
20 N A -2.4630
21 A A -1.6173
22 I A -1.4849
23 D A -3.2909
24 N A -3.1298
25 M A -1.7250
26 N A -2.7650
27 D A -3.9385
28 N A -2.8644
29 M A -1.6765
30 N A -3.0029
31 N A -2.2568
32 M A -0.5406
33 N A -1.6083
34 A A -0.7647
35 I A 0.3419
36 N A -1.2417
37 F A -0.0391
38 D A -1.4801
39 A A -1.4561
40 D A -2.7697
41 N A -2.2766
42 M A -1.4456
43 N A -2.5843
44 N A -2.4038
45 M A -1.3420
46 N A -2.0225
47 A A -1.2296
48 I A -0.9810
49 D A -2.3624
50 N A -1.8901
51 M A -0.4701
52 N A -1.3594
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Laboratory of Theory of Biopolymers 2018