Project name: 6YIO

Status: done

Started: 2026-03-29 09:52:07
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSLAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARGGSVSGTLVDFDIWGQGTMVTVSS
L: DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNIYPITFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:26)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:28)
Show buried residues

Minimal score value
-3.1229
Maximal score value
2.7907
Average score
-0.4527
Total score value
-103.6644

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.5793
2 V H -1.1980
3 Q H -1.4740
4 L H 0.0000
5 V H 0.3534
6 Q H 0.0000
7 S H -0.4865
8 G H -0.5275
9 A H 0.0778
11 E H 0.0203
12 V H 0.9768
13 K H -0.9375
14 K H -2.2117
15 P H -2.1426
16 G H -1.6175
17 S H -1.3026
18 S H -1.4503
19 V H 0.0000
20 K H -2.0282
21 V H 0.0000
22 S H -0.5193
23 C H 0.0000
24 K H -0.5891
25 A H 0.0000
26 S H -0.9366
27 G H -1.2815
28 G H -1.0502
29 T H -0.4969
30 F H 0.0000
35 S H 0.5336
36 S H 0.5368
37 L H 0.0000
38 A H 0.5231
39 I H 0.0000
40 S H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.5698
45 A H -0.9444
46 P H -0.8287
47 G H -1.2197
48 Q H -1.7407
49 G H -1.1144
50 L H 0.0000
51 E H -0.7296
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 G H 0.0000
56 I H 0.0000
57 I H 1.4338
58 P H 0.0000
59 I H 2.6775
62 F H 2.7907
63 G H 0.9894
64 T H 0.7742
65 A H 0.1733
66 N H -0.3068
67 Y H -0.7388
68 A H 0.0000
69 Q H -2.6201
70 K H -2.7248
71 F H 0.0000
72 Q H -2.4366
74 G H -1.6535
75 R H -1.5763
76 V H 0.0000
77 T H -0.9149
78 I H 0.0000
79 T H -0.3910
80 A H -0.0436
81 D H -0.8318
82 E H -0.8803
83 S H -0.7953
84 T H -0.7121
85 S H -0.9171
86 T H 0.0000
87 A H 0.0000
88 Y H -0.6081
89 M H 0.0000
90 E H -1.6672
91 L H 0.0000
92 S H -1.2007
93 S H -1.2602
94 L H 0.0000
95 R H -3.1229
96 S H -2.3424
97 E H -2.4575
98 D H 0.0000
99 T H -0.7969
100 A H 0.0000
101 V H 0.2717
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.3525
107 G H 0.0000
108 G H 0.0000
109 S H 0.5624
110 V H 1.5454
111 S H 0.4294
111A G H -0.1681
112A T H 0.1376
112 L H 0.4442
113 V H 0.0000
114 D H 0.0000
115 F H 0.0000
116 D H -0.3788
117 I H -0.5753
118 W H 0.0000
119 G H 0.0000
120 Q H -1.4199
121 G H -0.6751
122 T H 0.0000
123 M H 0.3789
124 V H 0.0000
125 T H -0.2213
126 V H 0.0000
127 S H -0.9725
128 S H -0.7669
1 D L -1.8720
2 I L 0.0000
3 Q L -1.9257
4 M L 0.0000
5 T L -1.3139
6 Q L -1.0044
7 S L -0.6951
8 P L -0.5353
9 S L -0.7317
10 T L -0.8068
11 L L -0.3311
12 S L -0.5113
13 A L 0.0000
14 S L -0.0512
15 V L 0.8064
16 G L -0.4621
17 D L -1.4653
18 R L -2.0905
19 V L 0.0000
20 T L -0.5934
21 I L 0.0000
22 T L -0.8035
23 C L 0.0000
24 R L -2.6185
25 A L 0.0000
26 S L -1.6712
27 Q L -1.6009
28 S L -1.0809
29 I L 0.0000
36 S L -0.6279
37 S L -0.5196
38 W L 0.0467
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L -0.7689
44 Q L 0.0000
45 K L -1.6229
46 P L -1.2110
47 G L -1.6109
48 K L -2.5250
49 A L -1.5415
50 P L 0.0000
51 K L -1.1781
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.1104
56 K L -0.3491
57 A L 0.0000
65 S L -0.3919
66 S L -0.1024
67 L L 0.2056
68 E L -0.2959
69 S L -0.4062
70 G L -0.5167
71 V L -0.3110
72 P L -0.3436
74 S L -0.3982
75 R L -0.7839
76 F L 0.0000
77 S L -0.3209
78 G L -0.3297
79 S L -0.7010
80 G L -1.0334
83 S L -0.9917
84 G L -0.9970
85 T L -1.4965
86 E L -1.8507
87 F L 0.0000
88 T L -0.7241
89 L L 0.0000
90 T L -0.5969
91 I L 0.0000
92 S L -1.1997
93 S L -1.0395
94 L L 0.0000
95 Q L -0.8204
96 P L -0.7245
97 D L -1.8462
98 D L 0.0000
99 F L -0.3631
100 A L 0.0000
101 T L -0.8726
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0000
108 N L 0.2680
109 I L 0.9981
114 Y L 0.8450
115 P L -0.1622
116 I L 0.0000
117 T L -0.3466
118 F L -0.2245
119 G L 0.0000
120 G L -0.9045
121 G L 0.0000
122 T L 0.0000
123 K L -1.5302
124 V L 0.0000
125 E L -0.6373
126 I L 1.0608
127 K L -0.7471
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018