| Chain sequence(s) |
L: KKFPEPYLAPAED
input PDB |
| Selected Chain(s) | L |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with L chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:08)
[INFO] Main: Simulation completed successfully. (00:00:09)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 0 | K | L | -1.1104 | |
| 1 | K | L | -0.5466 | |
| 2 | F | L | 1.7526 | |
| 3 | P | L | -0.2454 | |
| 4 | E | L | -1.5583 | |
| 5 | P | L | -0.2801 | |
| 6 | Y | L | 1.5463 | |
| 7 | L | L | 1.7834 | |
| 8 | A | L | 0.0540 | |
| 9 | P | L | -0.2435 | |
| 10 | A | L | -0.2928 | |
| 11 | E | L | -2.0047 | |
| 12 | D | L | -2.1019 |