Project name: 4B4

Status: done

Started: 2025-06-22 09:58:53
Settings
Chain sequence(s) H: QVQLQQSGAVLMKPGASVKISCKATGYSFTNYWIDWIKQRPGHGLEWIGENLPGTRNNYNENFKGKATFTADPSSNTAYIQLNSLTSDDSAVYYCAREALGGDYGLDYWGQGTSLTVSS
L: DVVMTQTPRSLPVSLGDQASMSCRSSQSLKHSNGDTYLHWYLQKPGQSPNLLIYKVSNRFSGVPDRFSGSGSGTEFTFKISRVEAEDLGVYFCSQSTHVPYTFGGGTRLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:11)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:13)
Show buried residues

Minimal score value
-3.0414
Maximal score value
1.4055
Average score
-0.6425
Total score value
-148.4202

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.5922
2 V H 0.0000
3 Q H -1.9304
4 L H 0.0000
5 Q H -2.1472
6 Q H 0.0000
7 S H -0.8906
8 G H -0.6713
9 A H 0.3641
11 V H 0.9735
12 L H 1.4055
13 M H -0.0188
14 K H -1.6485
15 P H -1.5077
16 G H -1.1447
17 A H -0.9224
18 S H -0.9720
19 V H 0.0000
20 K H -1.1547
21 I H 0.0000
22 S H -0.6958
23 C H 0.0000
24 K H -1.7129
25 A H 0.0000
26 T H -1.3249
27 G H -1.1259
28 Y H -0.7330
29 S H -0.6206
30 F H 0.0000
35 T H -0.8017
36 N H -1.0272
37 Y H -0.1337
38 W H 0.0000
39 I H 0.0000
40 D H 0.0000
41 W H 0.0000
42 I H 0.0000
43 K H 0.0000
44 Q H -0.5695
45 R H -1.1384
46 P H -0.9125
47 G H -1.2083
48 H H -1.5510
49 G H -0.9167
50 L H 0.0000
51 E H -0.6886
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 E H 0.0000
56 N H 0.0000
57 L H -0.9055
58 P H -0.9792
59 G H -1.2193
63 T H -1.3567
64 R H -2.2911
65 N H -1.5986
66 N H -1.1114
67 Y H -1.1631
68 N H 0.0000
69 E H -3.0414
70 N H -2.7167
71 F H 0.0000
72 K H -2.8963
74 G H -1.9025
75 K H -1.6566
76 A H 0.0000
77 T H -0.8390
78 F H 0.0000
79 T H -0.5177
80 A H -0.6883
81 D H -0.8707
82 P H -0.7649
83 S H -0.6304
84 S H -0.7565
85 N H -1.0111
86 T H 0.0000
87 A H 0.0000
88 Y H -0.2220
89 I H 0.0000
90 Q H -0.9162
91 L H 0.0000
92 N H -0.9352
93 S H -0.9139
94 L H 0.0000
95 T H -1.2234
96 S H -1.3641
97 D H -1.8558
98 D H 0.0000
99 S H -0.4715
100 A H 0.0000
101 V H 0.1642
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 E H 0.2066
108 A H 0.3968
109 L H 1.1189
110 G H 0.2042
111 G H 0.1639
112 D H 0.1636
113 Y H 0.6392
114 G H 0.0000
115 L H 0.0000
116 D H -0.0492
117 Y H -0.1835
118 W H -0.5303
119 G H 0.0000
120 Q H -1.8347
121 G H -0.9315
122 T H 0.0000
123 S H 0.1825
124 L H 0.0000
125 T H 0.1592
126 V H 0.0000
127 S H -0.5933
128 S H -0.7636
1 D L -1.3932
2 V L 0.0000
3 V L 0.8045
4 M L 0.0000
5 T L -0.5083
6 Q L 0.0000
7 T L -1.0785
8 P L -1.1669
9 R L -2.0919
10 S L -1.3404
11 L L -0.7357
12 P L -0.8472
13 V L 0.0000
14 S L -0.7450
15 L L -0.2046
16 G L -1.3338
17 D L -2.0357
18 Q L -2.2318
19 A L 0.0000
20 S L -0.8235
21 M L 0.0000
22 S L -1.1464
23 C L 0.0000
24 R L -2.1857
25 S L 0.0000
26 S L -0.9404
27 Q L -1.8425
28 S L -1.8372
29 L L 0.0000
30 K L -2.5905
31 H L -2.0125
32 S L -1.5993
34 N L -2.0756
35 G L -1.8320
36 D L -1.6310
37 T L -1.4345
38 Y L -0.4374
39 L L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 L L 0.0000
44 Q L -0.8813
45 K L -1.3167
46 P L -0.9368
47 G L -1.4118
48 Q L -2.0263
49 S L -1.2522
50 P L 0.0000
51 N L -0.9925
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.2851
56 K L -0.7629
57 V L 0.0000
65 S L -0.9487
66 N L -1.1527
67 R L -1.6805
68 F L -0.5453
69 S L -0.5929
70 G L -0.8002
71 V L -0.8172
72 P L -1.1642
74 D L -2.1846
75 R L 0.0000
76 F L 0.0000
77 S L -1.2153
78 G L 0.0000
79 S L -0.9912
80 G L -1.3194
83 S L -1.2171
84 G L -1.6602
85 T L -2.0065
86 E L -2.3941
87 F L 0.0000
88 T L -1.0382
89 F L 0.0000
90 K L -1.4476
91 I L 0.0000
92 S L -2.1417
93 R L -2.5463
94 V L 0.0000
95 E L -2.1853
96 A L -1.1971
97 E L -2.0371
98 D L 0.0000
99 L L -0.5655
100 G L 0.0000
101 V L -0.2876
102 Y L 0.0000
103 F L 0.0000
104 C L 0.0000
105 S L 0.0000
106 Q L 0.0000
107 S L 0.3671
108 T L -0.4402
109 H L -0.1557
114 V L 1.0808
115 P L 0.0419
116 Y L 0.5604
117 T L 0.3093
118 F L 0.3583
119 G L 0.0000
120 G L -0.6612
121 G L 0.0000
122 T L 0.0000
123 R L -1.2255
124 L L 0.0000
125 E L -0.6841
126 I L -0.0405
127 K L -1.3075
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Laboratory of Theory of Biopolymers 2018