Project name: gene2

Status: done

Started: 2026-04-27 07:32:46
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Chain sequence(s) A: MRNSQERNNRLENLCWRIWNVARRKKQKIERMLTIEHTKFPTAKEFLEYATQFAPPSGFTIQFVTLMSPNTRIVLFSATASLRSYAPSLVRIASSVVSSCRRALGRKSSPFQCGEEELTSVRRRSRRCWGGRAHMRRSSTGAGSKSSPACAGRLASVGRKKSSPGVGRKKLADIGEEDPLARGERRTHRRRGGARRWCPDDSDGHRATGGQRRSASEGWSGTE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:48)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:50)
Show buried residues

Minimal score value
-4.9904
Maximal score value
2.8391
Average score
-1.0889
Total score value
-242.8164

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A -0.1897
2 R A -2.4186
3 N A -3.2761
4 S A -2.9611
5 Q A -3.7459
6 E A -4.1722
7 R A -4.3178
8 N A -3.6224
9 N A -3.4015
10 R A -3.2418
11 L A -1.4350
12 E A -1.3210
13 N A -0.4650
14 L A 0.9425
15 C A 1.3722
16 W A 1.6171
17 R A 0.2992
18 I A 2.0334
19 W A 1.2619
20 N A -0.5757
21 V A 0.0045
22 A A -1.4924
23 R A -3.7042
24 R A -4.3976
25 K A -4.6254
26 K A -4.9904
27 Q A -4.8751
28 K A -4.6144
29 I A -2.6241
30 E A -2.8849
31 R A -2.7311
32 M A -0.7967
33 L A -0.1976
34 T A -0.2574
35 I A 0.9192
36 E A -0.9056
37 H A -1.2620
38 T A -1.1944
39 K A -1.8021
40 F A -0.5451
41 P A -0.7872
42 T A -0.7614
43 A A -0.7798
44 K A -2.0962
45 E A -1.8306
46 F A -0.7536
47 L A -0.6491
48 E A -1.9570
49 Y A -0.4076
50 A A 0.0419
51 T A -0.3138
52 Q A -0.4866
53 F A 1.2409
54 A A 0.6609
55 P A 0.5039
56 P A 0.0736
57 S A -0.1253
58 G A 0.1106
59 F A 1.3121
60 T A 0.7599
61 I A 1.0572
62 Q A 0.3248
63 F A 1.8236
64 V A 2.8204
65 T A 2.4104
66 L A 2.8391
67 M A 1.7104
68 S A 0.2638
69 P A -0.6920
70 N A -1.5164
71 T A -0.9244
72 R A -1.1316
73 I A 1.1132
74 V A 2.0803
75 L A 2.5326
76 F A 2.3051
77 S A 1.2845
78 A A 0.8011
79 T A 0.4653
80 A A 0.3034
81 S A 0.0996
82 L A 0.3435
83 R A -1.3431
84 S A -0.4396
85 Y A 1.1058
86 A A 0.5532
87 P A 0.3324
88 S A 0.6316
89 L A 1.8233
90 V A 1.3978
91 R A 0.1035
92 I A 2.2992
93 A A 1.8291
94 S A 1.0951
95 S A 1.2667
96 V A 2.0103
97 V A 1.3869
98 S A 0.0754
99 S A -0.1423
100 C A 0.0684
101 R A -1.8921
102 R A -2.3500
103 A A -1.1523
104 L A -0.5956
105 G A -2.2951
106 R A -3.1241
107 K A -2.5863
108 S A -1.2719
109 S A -0.8026
110 P A 0.1466
111 F A 1.2899
112 Q A -0.3247
113 C A -0.2874
114 G A -1.8193
115 E A -3.1283
116 E A -3.3612
117 E A -2.6902
118 L A -1.0221
119 T A -1.8274
120 S A -1.6391
121 V A -0.5553
122 R A -2.9174
123 R A -3.5979
124 R A -3.6457
125 S A -2.8423
126 R A -3.6283
127 R A -3.2270
128 C A -0.6192
129 W A 0.1448
130 G A -0.8624
131 G A -1.2817
132 R A -2.1490
133 A A -1.4028
134 H A -1.6512
135 M A -0.9629
136 R A -2.5510
137 R A -2.7878
138 S A -1.5347
139 S A -1.1682
140 T A -0.6339
141 G A -0.6266
142 A A -0.4519
143 G A -1.0233
144 S A -1.2804
145 K A -2.0658
146 S A -1.4136
147 S A -0.7980
148 P A -0.2048
149 A A 0.3033
150 C A 0.6335
151 A A -0.2397
152 G A -0.8500
153 R A -1.3023
154 L A 0.5552
155 A A 0.7053
156 S A 0.9155
157 V A 1.0100
158 G A -0.7471
159 R A -2.8996
160 K A -3.5694
161 K A -3.1027
162 S A -1.6580
163 S A -0.7373
164 P A -0.3416
165 G A 0.0484
166 V A 0.6923
167 G A -1.2373
168 R A -2.7851
169 K A -2.9748
170 K A -2.4304
171 L A -0.0220
172 A A -0.2917
173 D A -0.9255
174 I A 0.6976
175 G A -1.2554
176 E A -3.1219
177 E A -3.5675
178 D A -2.8142
179 P A -1.1988
180 L A 0.3639
181 A A -0.3574
182 R A -2.3624
183 G A -2.8273
184 E A -3.8924
185 R A -4.0427
186 R A -3.8627
187 T A -2.9458
188 H A -3.3557
189 R A -4.0056
190 R A -4.0829
191 R A -3.6826
192 G A -2.4998
193 G A -2.0833
194 A A -1.7550
195 R A -2.5158
196 R A -2.0152
197 W A -0.0255
198 C A -0.0522
199 P A -0.9309
200 D A -2.6928
201 D A -3.1567
202 S A -2.6473
203 D A -3.1277
204 G A -2.5138
205 H A -2.5352
206 R A -2.6239
207 A A -1.2312
208 T A -0.8760
209 G A -1.0082
210 G A -1.9511
211 Q A -2.8599
212 R A -3.5868
213 R A -3.2654
214 S A -1.5894
215 A A -0.9258
216 S A -1.3727
217 E A -1.9145
218 G A -1.0384
219 W A 0.3509
220 S A 0.0853
221 G A -0.7467
222 T A -1.2479
223 E A -1.9561
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Laboratory of Theory of Biopolymers 2018