Chain sequence(s) |
A: NFGAILS
C: NFGAILS B: NFGAILS E: NFGAILS D: NFGAILS G: NFGAILS F: NFGAILS H: NFGAILS input PDB |
Selected Chain(s) | A,C,B,E,D,G,F,H |
Distance of aggregation | 5 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] FoldX: Starting FoldX energy minimalization (00:00:00) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:14) [INFO] Main: Simulation completed successfully. (00:00:16) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | N | A | -1.2787 | |
2 | F | A | 0.0942 | |
3 | G | A | 0.0000 | |
4 | A | A | 0.2585 | |
5 | I | A | 1.3037 | |
6 | L | A | 0.0000 | |
7 | S | A | -0.3683 | |
1 | N | B | -1.1722 | |
2 | F | B | 0.5334 | |
3 | G | B | 0.0000 | |
4 | A | B | 0.0000 | |
5 | I | B | 0.3997 | |
6 | L | B | 0.8017 | |
7 | S | B | -0.1315 | |
1 | N | C | -0.9439 | |
2 | F | C | 1.6227 | |
3 | G | C | 0.0644 | |
4 | A | C | 0.2972 | |
5 | I | C | 2.1779 | |
6 | L | C | 1.2417 | |
7 | S | C | -0.1956 | |
1 | N | D | -0.9302 | |
2 | F | D | 1.6278 | |
3 | G | D | -0.0368 | |
4 | A | D | 0.0497 | |
5 | I | D | 0.9086 | |
6 | L | D | 1.5689 | |
7 | S | D | -0.0808 | |
1 | N | E | -1.2280 | |
2 | F | E | 0.2138 | |
3 | G | E | 0.2612 | |
4 | A | E | 0.3131 | |
5 | I | E | 1.6936 | |
6 | L | E | 0.5415 | |
7 | S | E | -0.4619 | |
1 | N | F | -1.1621 | |
2 | F | F | 0.5714 | |
3 | G | F | 0.2212 | |
4 | A | F | 0.0000 | |
5 | I | F | 0.3109 | |
6 | L | F | 0.8500 | |
7 | S | F | -0.2143 | |
1 | N | G | -1.1476 | |
2 | F | G | 0.5190 | |
3 | G | G | -0.0986 | |
4 | A | G | 0.2945 | |
5 | I | G | 2.1329 | |
6 | L | G | 1.0599 | |
7 | S | G | -0.2418 | |
1 | N | H | -0.9414 | |
2 | F | H | 1.6650 | |
3 | G | H | 0.1508 | |
4 | A | H | 0.1779 | |
5 | I | H | 1.3890 | |
6 | L | H | 1.6208 | |
7 | S | H | -0.0925 |