Project name: Ttt [mutate: YD94L] [mutate: YD55H]

Status: done

Started: 2025-04-13 18:56:43
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Chain sequence(s) H: SEVQLVESGGGLVQPGGSLRLSCAASGFNVYYSSIHWVRQAPGKGLEWVASIYSYYGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARNVGYGMDYWGQGTLVTVSSASTKGPSVFPLAPAATAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTYICNVNHKPSNTKVDKKVE
L: SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYIDGLITFGQGTKVEIKRTVAAPSVFIFPPSAKSGTASVVCLLNNFYPREAKVQWAAASQESVTEQDSKDSTYSLSSTLTLYEKHKVYACEVTHQGLSSPVTK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues YD55H
Energy difference between WT (input) and mutated protein (by FoldX) 0.713071 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:01:07)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:13)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:20)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:22)
Show buried residues

Minimal score value
-3.2154
Maximal score value
2.0777
Average score
-0.555
Total score value
-223.6577

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
3 S H -1.1958
4 E H -2.0200
5 V H -1.0022
6 Q H -0.8048
7 L H 0.0000
8 V H 0.6848
9 E H 0.0000
10 S H -0.4285
11 G H -0.6777
12 G H -0.3448
13 G H -0.0010
14 L H 0.0325
15 V H 0.0000
16 Q H -1.6631
17 P H -1.9364
18 G H -1.6735
19 G H -1.3338
20 S H -1.2930
21 L H -1.0110
22 R H -1.5925
23 L H 0.0000
24 S H -0.3497
25 C H 0.0000
26 A H -0.1457
27 A H -0.3277
28 S H -0.6750
29 G H -1.0932
30 F H -0.2135
31 N H -0.4085
32 V H 0.0000
33 Y H 1.1331
34 Y H 1.7930
35 S H 0.0000
36 S H 0.0000
37 I H 0.0000
38 H H 0.0000
39 W H 0.0000
40 V H 0.0000
41 R H 0.0000
42 Q H -0.7846
43 A H -1.1510
44 P H -0.9352
45 G H -1.4874
46 K H -2.3575
47 G H -1.6206
48 L H 0.0000
49 E H -1.1930
50 W H 0.0000
51 V H 0.0000
52 A H 0.0000
53 S H 0.0000
54 I H 0.0000
55 D H 0.6106 mutated: YD55H
56 S H 0.9798
57 Y H 2.0777
58 Y H 2.0130
59 G H 0.9558
60 Y H 1.4090
61 T H 0.5218
62 S H -0.3502
63 Y H -0.8634
64 A H -1.3820
65 D H -2.4885
66 S H -1.7786
67 V H 0.0000
68 K H -2.4716
69 G H -1.8290
70 R H -1.8211
71 F H 0.0000
72 T H -0.9489
73 I H 0.0000
74 S H -0.3289
75 A H -0.6502
76 D H -1.3628
77 T H -0.8487
78 S H -1.3628
79 K H -2.2126
80 N H -1.4450
81 T H 0.0000
82 A H 0.0000
83 Y H 0.0000
84 L H 0.0000
85 Q H -1.2852
86 M H 0.0000
87 N H -2.1597
88 S H -1.7119
89 L H 0.0000
90 R H -2.9868
91 A H -2.0426
92 E H -2.4741
93 D H 0.0000
94 T H -0.8142
95 A H 0.0000
96 V H 0.2374
97 Y H 0.0000
98 Y H 0.0000
99 C H 0.0000
100 A H 0.0000
101 R H 0.0000
102 N H 0.3546
103 V H 0.9699
104 G H 0.5129
105 Y H 1.2453
106 G H 0.5991
107 M H 0.0000
108 D H 0.2477
109 Y H 0.1570
110 W H -0.2326
111 G H 0.0000
112 Q H -1.3280
113 G H -0.6191
114 T H -0.0521
115 L H 0.3006
116 V H 0.0000
117 T H 0.0000
118 V H 0.0000
119 S H -1.0349
120 S H -0.6327
121 A H -0.4954
122 S H -0.6717
123 T H -0.9036
124 K H -1.6379
125 G H -1.6519
126 P H -0.7206
127 S H -0.2214
128 V H 0.0000
129 F H -0.1367
130 P H -0.5124
131 L H 0.0000
132 A H -0.6295
133 P H -0.2564
134 A H -0.1073
135 A H 0.0487
142 T H -0.2698
143 A H -0.1797
144 A H 0.0000
145 L H 0.0000
146 G H 0.0000
147 C H 0.0000
148 L H 0.0000
149 V H 0.0000
150 K H 0.0000
151 D H -0.4832
152 Y H 0.0000
153 F H 0.0000
154 P H 0.0000
155 E H -0.5116
156 P H -0.6786
157 V H -0.7850
158 T H -0.7132
159 V H -0.4820
160 S H -0.4947
161 W H 0.0000
162 N H -0.8886
163 S H -0.7537
164 G H -0.6205
165 A H -0.2936
166 L H -0.0017
167 T H -0.1961
168 S H -0.1960
169 G H -0.3324
170 V H 0.1319
171 H H -0.4077
172 T H -0.2077
173 F H 0.0000
174 P H -0.3850
175 A H 0.1542
176 V H 0.3332
177 L H 0.9077
178 Q H 0.1565
179 S H -0.1074
180 S H -0.2461
181 G H -0.0160
182 L H -0.0087
183 Y H 0.2749
184 S H 0.0000
185 L H 0.0000
186 S H 0.0000
187 S H 0.0000
188 V H 0.0000
189 V H 0.0000
190 T H -0.1971
191 V H 0.0000
192 P H -0.2853
193 S H -0.2122
194 S H -0.0871
195 S H 0.2770
196 L H 0.8603
197 G H 0.0211
200 T H -0.4034
201 Y H -0.4554
202 I H -1.0545
203 C H 0.0000
204 N H -1.6726
205 V H 0.0000
206 N H -2.3228
207 H H 0.0000
208 K H -2.8537
209 P H -1.6609
210 S H -2.0030
211 N H -2.7104
212 T H -2.2552
213 K H -2.8887
214 V H -1.7681
215 D H -2.6900
216 K H -2.2434
217 K H -2.2511
218 V H 0.0000
219 E H -1.9183
1 S L -1.6773
2 D L -2.1803
3 I L -1.4567
4 Q L -2.0977
5 M L 0.0000
6 T L -1.3905
7 Q L 0.0000
8 S L -0.9222
9 P L -0.6282
10 S L -0.9594
11 S L -0.9074
12 L L -0.5213
13 S L -0.8938
14 A L 0.0000
15 S L -0.6025
16 V L 0.2107
17 G L -0.7293
18 D L -1.4715
19 R L -2.2013
20 V L 0.0000
21 T L -0.5866
22 I L 0.0000
23 T L -0.8318
24 C L 0.0000
25 R L -2.4987
26 A L 0.0000
27 S L -1.2454
28 Q L -0.5987
29 S L 0.1230
30 V L 1.3236
31 S L 0.0000
32 S L 0.1634
33 A L 0.4224
34 V L 0.0000
35 A L 0.0000
36 W L 0.0000
37 Y L 0.0000
38 Q L 0.0000
39 Q L 0.0000
40 K L -1.6879
41 P L -1.5743
42 G L -1.6491
43 K L -2.5255
44 A L -1.4751
45 P L 0.0000
46 K L -1.0361
47 L L 0.0000
48 L L 0.0000
49 I L 0.0000
50 Y L 0.5205
51 S L 0.1270
52 A L 0.0000
53 S L -0.3183
54 S L 0.3146
55 L L 0.6027
56 Y L 0.4503
57 S L -0.0143
58 G L -0.3857
59 V L -0.1595
60 P L -0.3302
61 S L -0.4029
62 R L -0.7790
63 F L 0.0000
64 S L -0.2470
65 G L -0.3693
66 S L -0.8730
67 R L -1.4932
68 S L -1.2176
69 G L -1.0601
70 T L -1.1599
71 D L -1.7015
72 F L 0.0000
73 T L -0.7843
74 L L 0.0000
75 T L -0.6056
76 I L 0.0000
77 S L -1.3062
78 S L -1.1298
79 L L 0.0000
80 Q L -0.9620
81 P L -1.1953
82 E L -1.9288
83 D L 0.0000
84 F L -0.6778
85 A L 0.0000
86 T L -1.0128
87 Y L 0.0000
88 Y L 0.0000
89 C L 0.0000
90 Q L 0.0000
91 Q L 0.0000
92 Y L 0.4905
93 I L 0.0000
94 D L -1.3750
95 G L -0.5285
96 L L -0.0946
97 I L 0.0000
98 T L -0.2986
99 F L 0.0000
100 G L 0.0000
101 Q L -1.8538
102 G L 0.0000
103 T L 0.0000
104 K L -1.8747
105 V L 0.0000
106 E L -1.3317
107 I L -0.6858
108 K L -1.6067
109 R L -1.2984
110 T L -0.1653
111 V L 0.3996
112 A L 0.1814
113 A L -0.1224
114 P L 0.0000
115 S L -0.2227
116 V L 0.0000
117 F L -0.0328
118 I L 0.0518
119 F L 0.0000
120 P L -0.2418
121 P L -0.4498
122 S L -0.5443
126 A L -0.8892
127 K L -1.9217
128 S L -1.2779
129 G L -0.8833
130 T L -0.3456
131 A L -0.1176
132 S L 0.1488
133 V L 0.0000
134 V L 0.0000
135 C L 0.0000
136 L L 0.0000
137 L L 0.0000
138 N L -0.4450
139 N L -1.0485
140 F L 0.0000
141 Y L -1.1270
142 P L -1.7386
143 R L -3.0977
144 E L -3.2154
145 A L -2.2488
146 K L -2.3017
147 V L -1.3386
148 Q L -1.3271
149 W L -0.3725
157 A L -0.0280
158 A L 0.0394
159 A L 0.2716
160 S L -0.5537
161 Q L -1.2609
162 E L -1.9568
163 S L -0.8605
164 V L -0.8663
165 T L -1.2427
166 E L -2.3404
167 Q L -1.9335
168 D L -1.9541
169 S L -1.8998
170 K L -2.2526
171 D L -1.7298
172 S L 0.0000
173 T L 0.0000
174 Y L 0.0000
175 S L 0.0000
176 L L 0.0000
177 S L 0.0000
178 S L 0.0000
179 T L -0.3414
180 L L 0.0569
181 T L 0.6670
182 L L 1.4655
187 Y L -0.2753
188 E L -2.4362
189 K L -3.0489
190 H L -2.7077
191 K L -2.5176
192 V L -1.4754
193 Y L -1.3069
194 A L -0.8088
195 C L 0.0000
196 E L -1.1609
197 V L 0.0000
198 T L -1.2212
199 H L 0.0000
200 Q L -1.5290
201 G L -0.3783
202 L L -0.2508
203 S L -0.4800
204 S L -0.4394
205 P L -0.6208
206 V L -0.2120
207 T L -0.8926
208 K L -1.4455
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Laboratory of Theory of Biopolymers 2018