Project name: obj1 [mutate: YD59C, YE95C, TY114C]

Status: done

Started: 2025-02-10 12:49:34
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Chain sequence(s) C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYWGQGTLVTVSS
input PDB
Selected Chain(s) C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues TY114C,YE95C,YD59C
Energy difference between WT (input) and mutated protein (by FoldX) 7.45314 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:24)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:24)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:25)
Show buried residues

Minimal score value
-3.2619
Maximal score value
1.9898
Average score
-0.7055
Total score value
-84.6554

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E C -2.0068
2 V C -0.9429
3 Q C -1.2891
4 L C 0.0000
5 V C 0.6299
6 E C 0.0000
7 S C -0.0453
8 G C -0.4870
9 G C 0.3114
10 G C 1.0599
11 L C 1.4373
12 V C -0.0308
13 Q C -1.3366
14 P C -1.4885
15 G C -1.4134
16 G C -0.9789
17 S C -1.2324
18 L C -0.9310
19 R C -2.0966
20 L C 0.0000
21 S C -0.3583
22 C C 0.0000
23 A C -0.1615
24 A C 0.0000
25 S C -0.2077
26 D C 0.0000
27 F C 1.5458
28 T C 0.2525
29 F C 0.0000
30 R C -2.0331
31 S C -0.8871
32 Y C -1.2179
33 E C -1.0948
34 M C 0.0000
35 S C 0.0000
36 W C 0.0000
37 V C 0.0000
38 R C 0.0000
39 Q C -0.4637
40 A C -1.0343
41 P C -1.2942
42 G C -1.4571
43 K C -2.1828
44 G C -1.1586
45 L C 0.1348
46 E C -0.5037
47 W C 0.2169
48 V C 0.0000
49 S C 0.0000
50 A C 0.0000
51 I C 0.0000
52 S C -0.8821
53 G C -1.2616
54 S C -1.2472
55 G C -1.1166
56 G C -0.7876
57 S C -0.9495
58 T C -1.0505
59 D C -1.8416 mutated: YD59C
60 Y C -1.5541
61 A C -1.6626
62 D C -2.6133
63 S C -1.7163
64 V C 0.0000
65 K C -2.7259
66 G C -1.6185
67 R C 0.0000
68 F C 0.0000
69 T C -0.9513
70 I C 0.0000
71 S C -0.5745
72 R C -1.3626
73 D C -1.9805
74 N C -2.1901
75 S C -1.7905
76 K C -2.3163
77 N C -1.6492
78 T C 0.0000
79 L C 0.0000
80 Y C -0.6280
81 L C 0.0000
82 Q C -1.2341
83 M C 0.0000
84 N C -1.3333
85 S C -1.2327
86 L C 0.0000
87 R C -2.4721
88 A C -1.8893
89 E C -2.3445
90 D C 0.0000
91 T C -0.4357
92 A C 0.0000
93 I C 1.1417
94 Y C 0.0000
95 E C 0.3221 mutated: YE95C
96 C C 0.0000
97 A C 0.0000
98 R C 0.0000
99 L C 0.0000
100 R C -3.1363
101 D C -3.2619
102 G C -1.9283
103 F C -1.2083
104 N C -2.2712
105 K C -3.0962
106 G C -1.8345
107 F C -0.9658
108 D C -1.1388
109 Y C -0.3032
110 W C 0.2777
111 G C -0.1739
112 Q C -0.8421
113 G C 0.2613
114 Y C 1.1788 mutated: TY114C
115 L C 1.9898
116 V C 0.0000
117 T C 0.3261
118 V C 0.0000
119 S C -0.7746
120 S C -1.0601
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Laboratory of Theory of Biopolymers 2018