Project name: insulinFibril

Status: done

Started: 2026-06-16 06:26:25
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Chain sequence(s) A: QCCTSICSLYQLENYC
C: QCCTSICSLYQLENYC
B: IVEQCCTSICSLYQLENYC
E: QCCTSICSLYQLENYC
D: IVEQCCTSICSLYQLENYC
G: QCCTSICSLYQLENYC
F: IVEQCCTSICSLYQLENYC
I: QCCTSICSLYQLENYC
H: IVEQCCTSICSLYQLENYC
K: QCCTSICSLYQLENYC
J: IVEQCCTSICSLYQLENYC
M: QCCTSICSLYQLENYC
L: IVEQCCTSICSLYQLENYC
O: QCCTSICSLYQLENYC
N: IVEQCCTSICSLYQLENYC
P: IVEQCCTSICSLYQLENYC
a: HLCGSHLVEALYLVCGERGFFYT
c: HLCGSHLVEALYLVCGERGFFYT
b: HLCGSHLVEALYLVC
e: HLCGSHLVEALYLVCGERGFFYT
d: HLCGSHLVEALYLVC
g: HLCGSHLVEALYLVCGERGFFYT
f: HLCGSHLVEALYLVC
i: HLCGSHLVEALYLVCGERGFFYT
h: HLCGSHLVEALYLVC
k: HLCGSHLVEALYLVCGERGFFYT
j: HLCGSHLVEALYLVC
m: HLCGSHLVEALYLVCGERGFFYT
l: HLCGSHLVEALYLVC
o: HLCGSHLVEALYLVCGERGFFYT
n: HLCGSHLVEALYLVC
p: HLCGSHLVEALYLVC
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,P,a,c,b,e,d,g,f,i,h,k,j,m,l,o,n,p
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:59)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:08)
Show buried residues

Minimal score value
-2.8013
Maximal score value
2.8561
Average score
0.0974
Total score value
56.9012

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
5 H p -1.6279
6 L p 0.0000
7 C p 0.0000
8 G p -0.9227
9 S p -0.7139
10 H p -0.8824
11 L p 0.0000
12 V p 0.3893
13 E p 0.0000
14 A p 0.5080
15 L p 0.0000
16 Y p 1.7373
17 L p 0.0000
18 V p 2.2283
19 C p 2.0594
5 H o -1.6388
6 L o 0.0000
7 C o 0.0000
8 G o -0.9399
9 S o -0.7963
10 H o -0.9229
11 L o 0.0000
12 V o 1.0242
13 E o 0.0000
14 A o 0.7923
15 L o 0.0000
16 Y o 1.4238
17 L o 0.0000
18 V o 0.9419
19 C o 0.0000
20 G o 0.0000
21 E o -2.1818
22 R o -1.7076
23 G o 0.0000
24 F o 0.0000
25 F o 0.0000
26 Y o 0.0000
27 T o 0.0390
5 H n -1.2248
6 L n -0.5230
7 C n -0.3055
8 G n -0.8107
9 S n -0.7023
10 H n -0.9050
11 L n -0.1235
12 V n 0.5573
13 E n -0.3192
14 A n 0.3740
15 L n 1.4003
16 Y n 2.3287
17 L n 2.5111
18 V n 2.8561
19 C n 2.3289
5 H m -1.1743
6 L m -0.2076
7 C m -0.2104
8 G m -0.6763
9 S m -0.6646
10 H m -0.8220
11 L m 0.3888
12 V m 1.5472
13 E m 0.6440
14 A m 0.8050
15 L m 1.0941
16 Y m 1.9243
17 L m 0.0000
18 V m 1.7133
19 C m 0.0000
20 G m -1.0873
21 E m -2.8013
22 R m -2.2575
23 G m -0.7769
24 F m 0.0432
25 F m 0.2150
26 Y m 0.6508
27 T m 0.2134
5 H l -1.5669
6 L l 0.0000
7 C l 0.0000
8 G l 0.0000
9 S l -0.7992
10 H l -1.1198
11 L l 0.0000
12 V l 0.5460
13 E l 0.0000
14 A l 0.5645
15 L l 0.0000
16 Y l 1.2119
17 L l 0.0000
18 V l 1.4323
19 C l 1.3283
5 H k -1.8319
6 L k 0.0000
7 C k 0.0000
8 G k 0.0000
9 S k -0.4996
10 H k -0.7282
11 L k 0.0000
12 V k 0.8965
13 E k 0.0000
14 A k 0.5002
15 L k 0.0000
16 Y k 0.8238
17 L k 0.0000
18 V k 0.7819
19 C k 0.0000
20 G k 0.0000
21 E k -1.0108
22 R k 0.0000
23 G k 0.0000
24 F k 0.0000
25 F k 0.0000
26 Y k 0.0000
27 T k -0.1426
5 H j -1.7558
6 L j 0.0000
7 C j 0.0000
8 G j 0.0000
9 S j -0.7912
10 H j -1.1404
11 L j 0.0000
12 V j 0.4506
13 E j 0.0000
14 A j 0.4840
15 L j 0.0000
16 Y j 1.1585
17 L j 0.0000
18 V j 1.4691
19 C j 1.3473
5 H i -1.6571
6 L i 0.0000
7 C i 0.0000
8 G i 0.0000
9 S i -0.5638
10 H i -0.8371
11 L i 0.0000
12 V i 0.9756
13 E i 0.0000
14 A i 0.4952
15 L i 0.0000
16 Y i 0.8919
17 L i 0.0000
18 V i 0.8730
19 C i 0.0000
20 G i 0.0000
21 E i -1.2974
22 R i 0.0000
23 G i 0.0000
24 F i 0.0000
25 F i 0.0000
26 Y i 0.0000
27 T i -0.1424
5 H h -1.9493
6 L h 0.0000
7 C h 0.0000
8 G h 0.0000
9 S h -0.8058
10 H h -1.2743
11 L h 0.0000
12 V h 0.6211
13 E h 0.0000
14 A h 0.4764
15 L h 0.0000
16 Y h 1.0756
17 L h 0.0000
18 V h 1.6103
19 C h 1.4132
5 H g -1.7882
6 L g -1.1535
7 C g 0.0000
8 G g -0.8699
9 S g -0.5291
10 H g -0.7856
11 L g 0.0000
12 V g 0.6982
13 E g 0.0000
14 A g 0.3455
15 L g 0.0000
16 Y g 0.9441
17 L g 0.0000
18 V g 0.8336
19 C g 0.0000
20 G g 0.0000
21 E g -1.5081
22 R g -1.0053
23 G g 0.0000
24 F g 0.0000
25 F g 0.0000
26 Y g 0.0000
27 T g -0.1150
5 H f -1.8300
6 L f 0.0000
7 C f 0.0000
8 G f -0.9785
9 S f -0.7733
10 H f -1.2235
11 L f 0.0000
12 V f 0.4743
13 E f 0.0000
14 A f 0.5122
15 L f 0.0000
16 Y f 1.0823
17 L f 0.0000
18 V f 1.5141
19 C f 1.4104
5 H e -1.8839
6 L e 0.0000
7 C e 0.0000
8 G e -0.8642
9 S e -0.5304
10 H e -0.7239
11 L e 0.0000
12 V e 0.8766
13 E e 0.0000
14 A e 0.4891
15 L e 0.0000
16 Y e 0.8012
17 L e 0.0000
18 V e 0.7972
19 C e 0.0000
20 G e 0.0000
21 E e -1.1079
22 R e 0.0000
23 G e 0.0000
24 F e 0.0000
25 F e 0.0000
26 Y e 0.0000
27 T e -0.1426
5 H d -1.3998
6 L d -0.6653
7 C d -0.4427
8 G d -0.9000
9 S d -0.7201
10 H d -0.9170
11 L d 0.2617
12 V d 1.4202
13 E d 0.5144
14 A d 0.7616
15 L d 1.1140
16 Y d 2.1273
17 L d 0.0000
18 V d 2.5475
19 C d 1.8608
5 H c -1.1535
6 L c -0.4535
7 C c -0.3658
8 G c -0.7280
9 S c -0.6673
10 H c -0.8540
11 L c -0.1787
12 V c 0.2746
13 E c -0.8173
14 A c 0.0274
15 L c 1.1323
16 Y c 1.9565
17 L c 2.0365
18 V c 1.7447
19 C c 0.5339
20 G c -1.0352
21 E c -2.4902
22 R c -2.3295
23 G c -0.7149
24 F c 0.4835
25 F c 0.6446
26 Y c 0.8525
27 T c 0.2754
5 H b -1.8488
6 L b 0.0000
7 C b 0.0000
8 G b -1.1008
9 S b -0.9560
10 H b -1.1472
11 L b 0.0000
12 V b 0.7064
13 E b 0.0000
14 A b 0.7839
15 L b 0.0000
16 Y b 1.6476
17 L b 0.0000
18 V b 1.8783
19 C b 1.7408
5 H a -1.5559
6 L a 0.0000
7 C a 0.0000
8 G a 0.0000
9 S a -0.6035
10 H a -0.7284
11 L a 0.0000
12 V a 0.4054
13 E a 0.1329
14 A a 0.2616
15 L a 0.0000
16 Y a 1.4437
17 L a 0.0000
18 V a 1.3538
19 C a 0.0000
20 G a -0.9186
21 E a -2.0431
22 R a -1.5712
23 G a 0.0000
24 F a 0.0000
25 F a 0.0000
26 Y a 0.0000
27 T a 0.0755
2 I P 1.0710
3 V P 0.9370
4 E P 0.0000
5 Q P -0.4926
6 C P 0.0000
7 C P 0.0000
8 T P 0.0000
9 S P 0.0000
10 I P 0.0000
11 C P 0.0000
12 S P 0.0000
13 L P 0.0000
14 Y P 0.1133
15 Q P -0.4420
16 L P 0.0000
17 E P 0.0000
18 N P 0.0000
19 Y P 1.7410
20 C P 1.7625
5 Q O -1.8292
6 C O 0.0000
7 C O 0.0000
8 T O 0.0000
9 S O 0.0000
10 I O 0.0000
11 C O 0.0000
12 S O -0.0226
13 L O 0.0000
14 Y O 1.2589
15 Q O 0.4056
16 L O 0.0000
17 E O -0.5538
18 N O 0.0000
19 Y O 0.9963
20 C O 0.7128
2 I N 1.6476
3 V N 0.9265
4 E N -1.1312
5 Q N -0.8893
6 C N -0.4692
7 C N -0.0438
8 T N 0.2385
9 S N 0.0962
10 I N 0.2738
11 C N 0.0028
12 S N 0.0328
13 L N 0.3616
14 Y N 0.2561
15 Q N -0.8170
16 L N 0.0000
17 E N -0.0618
18 N N 0.0000
19 Y N 2.1612
20 C N 2.0353
5 Q M -1.4718
6 C M -0.4213
7 C M -0.0417
8 T M 0.5633
9 S M 0.3763
10 I M 0.7272
11 C M 0.5166
12 S M 0.3149
13 L M 1.2840
14 Y M 1.6002
15 Q M 0.4709
16 L M 0.0371
17 E M -0.8758
18 N M -0.2184
19 Y M 1.2395
20 C M 1.1814
2 I L 0.8320
3 V L 0.8823
4 E L 0.0000
5 Q L -0.0850
6 C L 0.0000
7 C L 0.0000
8 T L 0.0000
9 S L 0.0000
10 I L 0.0000
11 C L 0.0000
12 S L 0.0000
13 L L 0.0000
14 Y L 0.1330
15 Q L -0.1946
16 L L 0.0000
17 E L 0.0000
18 N L 0.0000
19 Y L 1.4189
20 C L 1.3008
5 Q K -1.7223
6 C K 0.0000
7 C K 0.0000
8 T K 0.0000
9 S K 0.0000
10 I K 0.0000
11 C K 0.0000
12 S K -0.3257
13 L K 0.0000
14 Y K 0.7900
15 Q K 0.0767
16 L K 0.0000
17 E K -0.1688
18 N K 0.0000
19 Y K 0.8995
20 C K 0.6223
2 I J 1.0255
3 V J 1.1744
4 E J 0.0000
5 Q J -0.2742
6 C J 0.0000
7 C J 0.0000
8 T J 0.0000
9 S J 0.0000
10 I J 0.0000
11 C J 0.0000
12 S J 0.0000
13 L J 0.0000
14 Y J 0.1642
15 Q J -0.2812
16 L J 0.0000
17 E J 0.0000
18 N J 0.0000
19 Y J 1.5199
20 C J 1.3613
5 Q I -1.7880
6 C I 0.0000
7 C I 0.0000
8 T I 0.0000
9 S I 0.0000
10 I I 0.0000
11 C I 0.0000
12 S I -0.3230
13 L I 0.0000
14 Y I 0.9070
15 Q I 0.1103
16 L I 0.0000
17 E I -0.3729
18 N I 0.0000
19 Y I 0.9876
20 C I 0.6788
2 I H 1.1060
3 V H 1.1143
4 E H 0.0000
5 Q H -0.2066
6 C H 0.0000
7 C H 0.0000
8 T H 0.0000
9 S H 0.0000
10 I H 0.0000
11 C H 0.0000
12 S H 0.0000
13 L H 0.0000
14 Y H 0.2742
15 Q H -0.2031
16 L H 0.0000
17 E H 0.0000
18 N H 0.0000
19 Y H 1.4673
20 C H 1.3532
5 Q G -2.1634
6 C G 0.0000
7 C G 0.0000
8 T G 0.0000
9 S G 0.0000
10 I G 0.0000
11 C G 0.0000
12 S G -0.4398
13 L G 0.0000
14 Y G 0.9144
15 Q G 0.0234
16 L G 0.0000
17 E G -0.2398
18 N G 0.0000
19 Y G 0.9710
20 C G 0.6425
2 I F 0.8679
3 V F 0.8599
4 E F 0.0000
5 Q F -0.0840
6 C F 0.0000
7 C F 0.0000
8 T F 0.0000
9 S F 0.0000
10 I F 0.0000
11 C F 0.0000
12 S F 0.0000
13 L F 0.0000
14 Y F 0.1334
15 Q F -0.1809
16 L F 0.0000
17 E F 0.0000
18 N F 0.0000
19 Y F 1.4255
20 C F 1.3535
5 Q E -2.1405
6 C E 0.0000
7 C E 0.0000
8 T E 0.0000
9 S E 0.0000
10 I E 0.0000
11 C E 0.0000
12 S E -0.3656
13 L E 0.0000
14 Y E 0.7385
15 Q E 0.1095
16 L E 0.0000
17 E E 0.0000
18 N E 0.0000
19 Y E 0.9099
20 C E 0.6743
2 I D 1.3905
3 V D 1.9816
4 E D 0.0000
5 Q D -0.4223
6 C D -0.0345
7 C D 0.0424
8 T D 0.4634
9 S D 0.4463
10 I D 0.9062
11 C D 0.6227
12 S D 0.6611
13 L D 1.0188
14 Y D 1.1318
15 Q D 0.0515
16 L D 0.2665
17 E D -0.3139
18 N D 0.0740
19 Y D 1.5484
20 C D 1.6504
5 Q C -1.4444
6 C C -0.6842
7 C C 0.0000
8 T C 0.0503
9 S C 0.0061
10 I C 0.2980
11 C C 0.0014
12 S C 0.0964
13 L C 1.0090
14 Y C 1.3334
15 Q C -0.1134
16 L C -0.1173
17 E C -0.3617
18 N C 0.9191
19 Y C 1.6619
20 C C 0.8451
2 I B 1.3746
3 V B 1.3576
4 E B 0.0000
5 Q B -0.0981
6 C B 0.0000
7 C B 0.0000
8 T B 0.0000
9 S B 0.0000
10 I B 0.0000
11 C B 0.0000
12 S B 0.0000
13 L B 0.0000
14 Y B 0.5689
15 Q B 0.0857
16 L B 0.0000
17 E B 0.0000
18 N B 0.0000
19 Y B 1.4019
20 C B 1.6217
5 Q A -1.7691
6 C A 0.0000
7 C A 0.0000
8 T A 0.0000
9 S A 0.0000
10 I A 0.0000
11 C A 0.0000
12 S A -0.0098
13 L A 0.0000
14 Y A 0.9283
15 Q A 0.1030
16 L A 0.0000
17 E A -0.3191
18 N A 0.0000
19 Y A 1.0340
20 C A 0.8274
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Laboratory of Theory of Biopolymers 2018