Project name: Pep5-Mut9-KLVFF

Status: done

Started: 2026-02-11 06:18:51
Settings
Chain sequence(s) A: RGDGWKPFVIDATVLVALHTGITGIKLVFF
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:02)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:02)
Show buried residues

Minimal score value
-1.9571
Maximal score value
2.6388
Average score
0.5865
Total score value
17.5942

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -1.9327
2 G A -1.1911
3 D A -1.9571
4 G A -0.6224
5 W A 0.7687
6 K A -1.5122
7 P A -0.2470
8 F A 1.9406
9 V A 2.4668
10 I A 2.0106
11 D A -1.4064
12 A A -0.2699
13 T A 0.2434
14 V A 1.8482
15 L A 2.1854
16 V A 2.0780
17 A A 0.6998
18 L A 1.3733
19 H A -0.7126
20 T A -0.3041
21 G A 0.1199
22 I A 1.9581
23 T A 0.3070
24 G A 0.1729
25 I A 1.6498
26 K A -1.0224
27 L A 1.5671
28 V A 2.4475
29 F A 2.6388
30 F A 2.2962
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Laboratory of Theory of Biopolymers 2018