| Chain sequence(s) |
A: VQLVESGGGLVQPGGSLRLSCAASGFTFSDYWMYWVRQAPGKGLEWVSEINTNGLITKYPDSVKGRFTISRDNAKNTLYLQMNSLRPEDTAVYYCARSPSGFNRGQGTLVTVEVQLVESGGGLVQPGNSLRLSCAASGFTFSSFGMSWVRQAPGKGLEWVSSISGSGSDTLYADSVKGRFTISRDNAKTTLYLQMNSLRPEDTAVYYCTIGGSLSRSSQGTLVTVSSVQLVESGGGLVQPGGSLRLSCAASGFTFSDYWMYWVRQAPGKGLEWVSEINTNGLITKYPDSVKGRFTISRDNAKNTLYLQMNSLRPEDTAVYYCARSPSGFNRGQGTLVTV
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:35)
[INFO] Main: Simulation completed successfully. (00:04:37)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 2 | V | A | 0.9040 | |
| 3 | Q | A | -0.7457 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.2848 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.3749 | |
| 8 | G | A | -0.9829 | |
| 9 | G | A | -0.0966 | |
| 10 | G | A | 0.6454 | |
| 11 | L | A | 1.5881 | |
| 12 | V | A | 0.2770 | |
| 13 | Q | A | -1.1331 | |
| 14 | P | A | -1.3844 | |
| 15 | G | A | -1.5140 | |
| 16 | G | A | -1.2040 | |
| 17 | S | A | -1.2738 | |
| 18 | L | A | -1.2994 | |
| 19 | R | A | -2.2854 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.5502 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.3547 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.1798 | |
| 26 | G | A | 0.0015 | |
| 27 | F | A | 0.0027 | |
| 28 | T | A | -0.7439 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | -1.5752 | |
| 31 | D | A | -1.9191 | |
| 32 | Y | A | -0.7481 | |
| 33 | W | A | -0.3755 | |
| 34 | M | A | 0.0000 | |
| 35 | Y | A | -0.1840 | |
| 36 | W | A | 0.0000 | |
| 37 | V | A | 0.0000 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -0.5347 | |
| 40 | A | A | -0.9060 | |
| 41 | P | A | -1.0719 | |
| 42 | G | A | -1.1741 | |
| 43 | K | A | -1.7153 | |
| 44 | G | A | -1.2411 | |
| 45 | L | A | -0.5828 | |
| 46 | E | A | -0.6017 | |
| 47 | W | A | -0.2293 | |
| 48 | V | A | 0.0000 | |
| 49 | S | A | 0.0000 | |
| 50 | E | A | -0.5401 | |
| 51 | I | A | 0.0000 | |
| 52 | N | A | -0.5866 | |
| 53 | T | A | -1.1095 | |
| 54 | N | A | -1.2822 | |
| 55 | G | A | -0.1727 | |
| 56 | L | A | 1.2594 | |
| 57 | I | A | 1.0545 | |
| 58 | T | A | -0.0834 | |
| 59 | K | A | -1.3719 | |
| 60 | Y | A | -1.5121 | |
| 61 | P | A | 0.0000 | |
| 62 | D | A | -2.5559 | |
| 63 | S | A | -1.8672 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.4368 | |
| 66 | G | A | -1.8021 | |
| 67 | R | A | -2.1345 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -1.1466 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.4703 | |
| 72 | R | A | -1.1425 | |
| 73 | D | A | -1.7311 | |
| 74 | N | A | -2.2779 | |
| 75 | A | A | -1.4946 | |
| 76 | K | A | -2.3005 | |
| 77 | N | A | -1.7840 | |
| 78 | T | A | -1.0038 | |
| 79 | L | A | 0.0000 | |
| 80 | Y | A | -0.5697 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.5492 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -2.0445 | |
| 85 | S | A | -1.5572 | |
| 86 | L | A | 0.0000 | |
| 87 | R | A | -2.8730 | |
| 88 | P | A | -2.0590 | |
| 89 | E | A | -2.5959 | |
| 90 | D | A | -1.6888 | |
| 91 | T | A | -0.5412 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | 0.6766 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.0364 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | R | A | -0.5057 | |
| 99 | S | A | -0.0475 | |
| 100 | P | A | -0.0448 | |
| 101 | S | A | 0.0703 | |
| 102 | G | A | 0.0000 | |
| 103 | F | A | 0.9638 | |
| 104 | N | A | -0.7611 | |
| 105 | R | A | -1.0764 | |
| 106 | G | A | -0.8720 | |
| 107 | Q | A | -1.2495 | |
| 108 | G | A | 0.0000 | |
| 109 | T | A | 0.5409 | |
| 110 | L | A | 1.5803 | |
| 111 | V | A | 0.0000 | |
| 112 | T | A | 0.4561 | |
| 113 | V | A | -0.4840 | |
| 125 | E | A | -1.8964 | |
| 126 | V | A | -0.8640 | |
| 127 | Q | A | -1.0679 | |
| 128 | L | A | 0.0000 | |
| 129 | V | A | 1.1171 | |
| 130 | E | A | 0.0000 | |
| 131 | S | A | -0.0845 | |
| 132 | G | A | -0.5341 | |
| 133 | G | A | 0.2988 | |
| 134 | G | A | 0.7390 | |
| 135 | L | A | 1.4854 | |
| 136 | V | A | -0.1019 | |
| 137 | Q | A | -1.4101 | |
| 138 | P | A | -1.5665 | |
| 139 | G | A | -1.6052 | |
| 140 | N | A | -1.7200 | |
| 141 | S | A | -1.6806 | |
| 142 | L | A | -1.0090 | |
| 143 | R | A | -1.7045 | |
| 144 | L | A | 0.0000 | |
| 145 | S | A | -0.1675 | |
| 146 | C | A | 0.0000 | |
| 147 | A | A | 0.0178 | |
| 148 | A | A | 0.0000 | |
| 149 | S | A | -0.7489 | |
| 150 | G | A | -1.2297 | |
| 151 | F | A | -0.1354 | |
| 152 | T | A | -0.0830 | |
| 153 | F | A | 0.0000 | |
| 154 | S | A | -0.4388 | |
| 155 | S | A | 0.1742 | |
| 156 | F | A | 0.9040 | |
| 157 | G | A | -0.0958 | |
| 158 | M | A | 0.0000 | |
| 159 | S | A | 0.0000 | |
| 160 | W | A | 0.0000 | |
| 161 | V | A | 0.0000 | |
| 162 | R | A | 0.0000 | |
| 163 | Q | A | -0.7997 | |
| 164 | A | A | -1.1478 | |
| 165 | P | A | -1.0044 | |
| 166 | G | A | -1.4712 | |
| 167 | K | A | -2.4008 | |
| 168 | G | A | -1.6240 | |
| 169 | L | A | -1.0310 | |
| 170 | E | A | -1.6114 | |
| 171 | W | A | -0.3827 | |
| 172 | V | A | 0.0000 | |
| 173 | S | A | 0.0000 | |
| 174 | S | A | 0.1346 | |
| 175 | I | A | 0.0000 | |
| 176 | S | A | -0.6605 | |
| 177 | G | A | -0.4372 | |
| 178 | S | A | -0.8583 | |
| 179 | G | A | -1.2357 | |
| 180 | S | A | -1.2675 | |
| 181 | D | A | -1.7357 | |
| 182 | T | A | -0.2761 | |
| 183 | L | A | 0.8059 | |
| 184 | Y | A | -0.1117 | |
| 185 | A | A | -1.1215 | |
| 186 | D | A | -2.3294 | |
| 187 | S | A | -2.0201 | |
| 188 | V | A | 0.0000 | |
| 189 | K | A | -2.5652 | |
| 190 | G | A | -2.0223 | |
| 191 | R | A | -1.9985 | |
| 192 | F | A | 0.0000 | |
| 193 | T | A | -0.9145 | |
| 194 | I | A | 0.0000 | |
| 195 | S | A | -0.7495 | |
| 196 | R | A | -0.9029 | |
| 197 | D | A | -1.4512 | |
| 198 | N | A | -1.5368 | |
| 199 | A | A | -1.4092 | |
| 200 | K | A | -1.5698 | |
| 201 | T | A | -1.1400 | |
| 202 | T | A | 0.0000 | |
| 203 | L | A | 0.0000 | |
| 204 | Y | A | -0.4871 | |
| 205 | L | A | 0.0000 | |
| 206 | Q | A | -1.6517 | |
| 207 | M | A | 0.0000 | |
| 208 | N | A | -2.3027 | |
| 209 | S | A | -1.5840 | |
| 210 | L | A | 0.0000 | |
| 211 | R | A | -1.7211 | |
| 212 | P | A | -1.5223 | |
| 213 | E | A | -2.0726 | |
| 214 | D | A | 0.0000 | |
| 215 | T | A | -0.2583 | |
| 216 | A | A | 0.0000 | |
| 217 | V | A | 0.6249 | |
| 218 | Y | A | 0.0000 | |
| 219 | Y | A | 0.0000 | |
| 220 | C | A | 0.0000 | |
| 221 | T | A | 0.0000 | |
| 222 | I | A | 0.4046 | |
| 223 | G | A | -0.1534 | |
| 224 | G | A | -0.2891 | |
| 225 | S | A | -0.2073 | |
| 226 | L | A | 0.0492 | |
| 227 | S | A | -0.4501 | |
| 228 | R | A | -1.3481 | |
| 229 | S | A | -0.8560 | |
| 230 | S | A | -0.8821 | |
| 231 | Q | A | -0.9005 | |
| 232 | G | A | -0.1856 | |
| 233 | T | A | 0.5821 | |
| 234 | L | A | 1.5864 | |
| 235 | V | A | 0.0000 | |
| 236 | T | A | 0.4314 | |
| 237 | V | A | 0.0000 | |
| 238 | S | A | -0.6041 | |
| 239 | S | A | -0.7260 | |
| 250 | V | A | 0.6629 | |
| 251 | Q | A | -0.6065 | |
| 252 | L | A | 0.0000 | |
| 253 | V | A | 0.2113 | |
| 254 | E | A | 0.0000 | |
| 255 | S | A | -0.2265 | |
| 256 | G | A | -0.9508 | |
| 257 | G | A | 0.0676 | |
| 258 | G | A | 0.9991 | |
| 259 | L | A | 1.7668 | |
| 260 | V | A | 0.3065 | |
| 261 | Q | A | -0.9803 | |
| 262 | P | A | -1.3943 | |
| 263 | G | A | -1.4621 | |
| 264 | G | A | -1.0637 | |
| 265 | S | A | -1.3565 | |
| 266 | L | A | -1.0047 | |
| 267 | R | A | -1.6930 | |
| 268 | L | A | 0.0000 | |
| 269 | S | A | -0.4062 | |
| 270 | C | A | 0.0000 | |
| 271 | A | A | -0.1226 | |
| 272 | A | A | 0.0000 | |
| 273 | S | A | -0.2053 | |
| 274 | G | A | 0.0379 | |
| 275 | F | A | -0.0253 | |
| 276 | T | A | -0.4656 | |
| 277 | F | A | 0.0000 | |
| 278 | S | A | -1.4911 | |
| 279 | D | A | -1.6428 | |
| 280 | Y | A | -0.2197 | |
| 281 | W | A | 0.1555 | |
| 282 | M | A | 0.0000 | |
| 283 | Y | A | 0.1272 | |
| 284 | W | A | 0.0000 | |
| 285 | V | A | 0.0000 | |
| 286 | R | A | 0.0000 | |
| 287 | Q | A | -1.1374 | |
| 288 | A | A | -1.4210 | |
| 289 | P | A | -1.3328 | |
| 290 | G | A | -1.5993 | |
| 291 | K | A | -2.5151 | |
| 292 | G | A | -1.7846 | |
| 293 | L | A | -1.0927 | |
| 294 | E | A | -1.9696 | |
| 295 | W | A | -0.7053 | |
| 296 | V | A | 0.0000 | |
| 297 | S | A | 0.0000 | |
| 298 | E | A | -0.2600 | |
| 299 | I | A | 0.0000 | |
| 300 | N | A | 0.0346 | |
| 301 | T | A | -0.7304 | |
| 302 | N | A | -1.0208 | |
| 303 | G | A | 0.1233 | |
| 304 | L | A | 1.5078 | |
| 305 | I | A | 1.4024 | |
| 306 | T | A | 0.1229 | |
| 307 | K | A | -1.1911 | |
| 308 | Y | A | 0.0000 | |
| 309 | P | A | -1.9720 | |
| 310 | D | A | -2.8270 | |
| 311 | S | A | -1.9882 | |
| 312 | V | A | 0.0000 | |
| 313 | K | A | -3.1705 | |
| 314 | G | A | -2.3308 | |
| 315 | R | A | -2.4705 | |
| 316 | F | A | 0.0000 | |
| 317 | T | A | -1.2954 | |
| 318 | I | A | 0.0000 | |
| 319 | S | A | -0.4488 | |
| 320 | R | A | -1.0110 | |
| 321 | D | A | -1.8202 | |
| 322 | N | A | -1.9879 | |
| 323 | A | A | -1.3694 | |
| 324 | K | A | -2.2706 | |
| 325 | N | A | -1.6416 | |
| 326 | T | A | 0.0000 | |
| 327 | L | A | 0.0000 | |
| 328 | Y | A | -0.5237 | |
| 329 | L | A | 0.0000 | |
| 330 | Q | A | -1.5721 | |
| 331 | M | A | 0.0000 | |
| 332 | N | A | -1.9880 | |
| 333 | S | A | -1.5939 | |
| 334 | L | A | 0.0000 | |
| 335 | R | A | -2.1818 | |
| 336 | P | A | -1.7476 | |
| 337 | E | A | -2.2849 | |
| 338 | D | A | 0.0000 | |
| 339 | T | A | -0.2768 | |
| 340 | A | A | 0.0000 | |
| 341 | V | A | 0.5525 | |
| 342 | Y | A | 0.0000 | |
| 343 | Y | A | -0.2042 | |
| 344 | C | A | 0.0000 | |
| 345 | A | A | 0.0000 | |
| 346 | R | A | 0.1575 | |
| 347 | S | A | 0.0000 | |
| 348 | P | A | -0.0431 | |
| 349 | S | A | -0.1837 | |
| 350 | G | A | 0.0000 | |
| 351 | F | A | 0.9459 | |
| 352 | N | A | -0.1998 | |
| 353 | R | A | -1.1531 | |
| 354 | G | A | -0.9253 | |
| 355 | Q | A | -1.1954 | |
| 356 | G | A | 0.0000 | |
| 357 | T | A | 0.6686 | |
| 358 | L | A | 1.6983 | |
| 359 | V | A | 0.0000 | |
| 360 | T | A | 1.1326 | |
| 361 | V | A | 0.4120 |