Project name: 66eb60f4abedb53

Status: done

Started: 2026-07-07 09:07:06
Settings
Chain sequence(s) A: VQLVESGGGLVQPGGSLRLSCAASGFTFSDYWMYWVRQAPGKGLEWVSEINTNGLITKYPDSVKGRFTISRDNAKNTLYLQMNSLRPEDTAVYYCARSPSGFNRGQGTLVTVEVQLVESGGGLVQPGNSLRLSCAASGFTFSSFGMSWVRQAPGKGLEWVSSISGSGSDTLYADSVKGRFTISRDNAKTTLYLQMNSLRPEDTAVYYCTIGGSLSRSSQGTLVTVSSVQLVESGGGLVQPGGSLRLSCAASGFTFSDYWMYWVRQAPGKGLEWVSEINTNGLITKYPDSVKGRFTISRDNAKNTLYLQMNSLRPEDTAVYYCARSPSGFNRGQGTLVTV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:35)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:37)
Show buried residues

Minimal score value
-3.1705
Maximal score value
1.7668
Average score
-0.5796
Total score value
-196.4767

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
2 V A 0.9040
3 Q A -0.7457
4 L A 0.0000
5 V A 0.2848
6 E A 0.0000
7 S A -0.3749
8 G A -0.9829
9 G A -0.0966
10 G A 0.6454
11 L A 1.5881
12 V A 0.2770
13 Q A -1.1331
14 P A -1.3844
15 G A -1.5140
16 G A -1.2040
17 S A -1.2738
18 L A -1.2994
19 R A -2.2854
20 L A 0.0000
21 S A -0.5502
22 C A 0.0000
23 A A -0.3547
24 A A 0.0000
25 S A -0.1798
26 G A 0.0015
27 F A 0.0027
28 T A -0.7439
29 F A 0.0000
30 S A -1.5752
31 D A -1.9191
32 Y A -0.7481
33 W A -0.3755
34 M A 0.0000
35 Y A -0.1840
36 W A 0.0000
37 V A 0.0000
38 R A 0.0000
39 Q A -0.5347
40 A A -0.9060
41 P A -1.0719
42 G A -1.1741
43 K A -1.7153
44 G A -1.2411
45 L A -0.5828
46 E A -0.6017
47 W A -0.2293
48 V A 0.0000
49 S A 0.0000
50 E A -0.5401
51 I A 0.0000
52 N A -0.5866
53 T A -1.1095
54 N A -1.2822
55 G A -0.1727
56 L A 1.2594
57 I A 1.0545
58 T A -0.0834
59 K A -1.3719
60 Y A -1.5121
61 P A 0.0000
62 D A -2.5559
63 S A -1.8672
64 V A 0.0000
65 K A -2.4368
66 G A -1.8021
67 R A -2.1345
68 F A 0.0000
69 T A -1.1466
70 I A 0.0000
71 S A -0.4703
72 R A -1.1425
73 D A -1.7311
74 N A -2.2779
75 A A -1.4946
76 K A -2.3005
77 N A -1.7840
78 T A -1.0038
79 L A 0.0000
80 Y A -0.5697
81 L A 0.0000
82 Q A -1.5492
83 M A 0.0000
84 N A -2.0445
85 S A -1.5572
86 L A 0.0000
87 R A -2.8730
88 P A -2.0590
89 E A -2.5959
90 D A -1.6888
91 T A -0.5412
92 A A 0.0000
93 V A 0.6766
94 Y A 0.0000
95 Y A -0.0364
96 C A 0.0000
97 A A 0.0000
98 R A -0.5057
99 S A -0.0475
100 P A -0.0448
101 S A 0.0703
102 G A 0.0000
103 F A 0.9638
104 N A -0.7611
105 R A -1.0764
106 G A -0.8720
107 Q A -1.2495
108 G A 0.0000
109 T A 0.5409
110 L A 1.5803
111 V A 0.0000
112 T A 0.4561
113 V A -0.4840
125 E A -1.8964
126 V A -0.8640
127 Q A -1.0679
128 L A 0.0000
129 V A 1.1171
130 E A 0.0000
131 S A -0.0845
132 G A -0.5341
133 G A 0.2988
134 G A 0.7390
135 L A 1.4854
136 V A -0.1019
137 Q A -1.4101
138 P A -1.5665
139 G A -1.6052
140 N A -1.7200
141 S A -1.6806
142 L A -1.0090
143 R A -1.7045
144 L A 0.0000
145 S A -0.1675
146 C A 0.0000
147 A A 0.0178
148 A A 0.0000
149 S A -0.7489
150 G A -1.2297
151 F A -0.1354
152 T A -0.0830
153 F A 0.0000
154 S A -0.4388
155 S A 0.1742
156 F A 0.9040
157 G A -0.0958
158 M A 0.0000
159 S A 0.0000
160 W A 0.0000
161 V A 0.0000
162 R A 0.0000
163 Q A -0.7997
164 A A -1.1478
165 P A -1.0044
166 G A -1.4712
167 K A -2.4008
168 G A -1.6240
169 L A -1.0310
170 E A -1.6114
171 W A -0.3827
172 V A 0.0000
173 S A 0.0000
174 S A 0.1346
175 I A 0.0000
176 S A -0.6605
177 G A -0.4372
178 S A -0.8583
179 G A -1.2357
180 S A -1.2675
181 D A -1.7357
182 T A -0.2761
183 L A 0.8059
184 Y A -0.1117
185 A A -1.1215
186 D A -2.3294
187 S A -2.0201
188 V A 0.0000
189 K A -2.5652
190 G A -2.0223
191 R A -1.9985
192 F A 0.0000
193 T A -0.9145
194 I A 0.0000
195 S A -0.7495
196 R A -0.9029
197 D A -1.4512
198 N A -1.5368
199 A A -1.4092
200 K A -1.5698
201 T A -1.1400
202 T A 0.0000
203 L A 0.0000
204 Y A -0.4871
205 L A 0.0000
206 Q A -1.6517
207 M A 0.0000
208 N A -2.3027
209 S A -1.5840
210 L A 0.0000
211 R A -1.7211
212 P A -1.5223
213 E A -2.0726
214 D A 0.0000
215 T A -0.2583
216 A A 0.0000
217 V A 0.6249
218 Y A 0.0000
219 Y A 0.0000
220 C A 0.0000
221 T A 0.0000
222 I A 0.4046
223 G A -0.1534
224 G A -0.2891
225 S A -0.2073
226 L A 0.0492
227 S A -0.4501
228 R A -1.3481
229 S A -0.8560
230 S A -0.8821
231 Q A -0.9005
232 G A -0.1856
233 T A 0.5821
234 L A 1.5864
235 V A 0.0000
236 T A 0.4314
237 V A 0.0000
238 S A -0.6041
239 S A -0.7260
250 V A 0.6629
251 Q A -0.6065
252 L A 0.0000
253 V A 0.2113
254 E A 0.0000
255 S A -0.2265
256 G A -0.9508
257 G A 0.0676
258 G A 0.9991
259 L A 1.7668
260 V A 0.3065
261 Q A -0.9803
262 P A -1.3943
263 G A -1.4621
264 G A -1.0637
265 S A -1.3565
266 L A -1.0047
267 R A -1.6930
268 L A 0.0000
269 S A -0.4062
270 C A 0.0000
271 A A -0.1226
272 A A 0.0000
273 S A -0.2053
274 G A 0.0379
275 F A -0.0253
276 T A -0.4656
277 F A 0.0000
278 S A -1.4911
279 D A -1.6428
280 Y A -0.2197
281 W A 0.1555
282 M A 0.0000
283 Y A 0.1272
284 W A 0.0000
285 V A 0.0000
286 R A 0.0000
287 Q A -1.1374
288 A A -1.4210
289 P A -1.3328
290 G A -1.5993
291 K A -2.5151
292 G A -1.7846
293 L A -1.0927
294 E A -1.9696
295 W A -0.7053
296 V A 0.0000
297 S A 0.0000
298 E A -0.2600
299 I A 0.0000
300 N A 0.0346
301 T A -0.7304
302 N A -1.0208
303 G A 0.1233
304 L A 1.5078
305 I A 1.4024
306 T A 0.1229
307 K A -1.1911
308 Y A 0.0000
309 P A -1.9720
310 D A -2.8270
311 S A -1.9882
312 V A 0.0000
313 K A -3.1705
314 G A -2.3308
315 R A -2.4705
316 F A 0.0000
317 T A -1.2954
318 I A 0.0000
319 S A -0.4488
320 R A -1.0110
321 D A -1.8202
322 N A -1.9879
323 A A -1.3694
324 K A -2.2706
325 N A -1.6416
326 T A 0.0000
327 L A 0.0000
328 Y A -0.5237
329 L A 0.0000
330 Q A -1.5721
331 M A 0.0000
332 N A -1.9880
333 S A -1.5939
334 L A 0.0000
335 R A -2.1818
336 P A -1.7476
337 E A -2.2849
338 D A 0.0000
339 T A -0.2768
340 A A 0.0000
341 V A 0.5525
342 Y A 0.0000
343 Y A -0.2042
344 C A 0.0000
345 A A 0.0000
346 R A 0.1575
347 S A 0.0000
348 P A -0.0431
349 S A -0.1837
350 G A 0.0000
351 F A 0.9459
352 N A -0.1998
353 R A -1.1531
354 G A -0.9253
355 Q A -1.1954
356 G A 0.0000
357 T A 0.6686
358 L A 1.6983
359 V A 0.0000
360 T A 1.1326
361 V A 0.4120
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018