| Chain sequence(s) |
A: QDKCKKVYENYPVSKCQLANQCNYDCKLDKHARSGECFADEKRNLQCICDYCEY
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:12)
[INFO] Main: Simulation completed successfully. (00:02:12)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -2.4556 | |
| 2 | D | A | -3.2625 | |
| 3 | K | A | -3.3781 | |
| 4 | C | A | -2.4318 | |
| 5 | K | A | -2.4909 | |
| 6 | K | A | -1.5768 | |
| 7 | V | A | 0.2073 | |
| 8 | Y | A | -0.9168 | |
| 9 | E | A | -1.9589 | |
| 10 | N | A | -1.7513 | |
| 11 | Y | A | -0.6964 | |
| 12 | P | A | -0.4862 | |
| 13 | V | A | 0.4253 | |
| 14 | S | A | -0.1015 | |
| 15 | K | A | -0.4538 | |
| 16 | C | A | -0.3970 | |
| 17 | Q | A | -0.7252 | |
| 18 | L | A | 0.2005 | |
| 19 | A | A | -0.4751 | |
| 20 | N | A | -1.2987 | |
| 21 | Q | A | -0.7384 | |
| 22 | C | A | 0.0000 | |
| 23 | N | A | -0.7025 | |
| 24 | Y | A | 0.0510 | |
| 25 | D | A | 0.0000 | |
| 26 | C | A | 0.0000 | |
| 27 | K | A | -1.3213 | |
| 28 | L | A | -0.1503 | |
| 29 | D | A | -1.8263 | |
| 30 | K | A | -2.2315 | |
| 31 | H | A | -1.9570 | |
| 32 | A | A | 0.0000 | |
| 33 | R | A | -1.4004 | |
| 34 | S | A | -1.3664 | |
| 35 | G | A | -1.4451 | |
| 36 | E | A | -1.3890 | |
| 37 | C | A | -0.0767 | |
| 38 | F | A | 0.5752 | |
| 39 | A | A | -0.9104 | |
| 40 | D | A | -2.2313 | |
| 41 | E | A | -3.3763 | |
| 42 | K | A | -3.7794 | |
| 43 | R | A | -3.5108 | |
| 44 | N | A | -2.1010 | |
| 45 | L | A | -0.8189 | |
| 46 | Q | A | -0.1831 | |
| 47 | C | A | 0.0000 | |
| 48 | I | A | -0.2957 | |
| 49 | C | A | 0.0000 | |
| 50 | D | A | -1.9030 | |
| 51 | Y | A | -1.5101 | |
| 52 | C | A | -1.0797 | |
| 53 | E | A | -1.4238 | |
| 54 | Y | A | 0.0990 |