Project name: Busy_Y39A

Status: done

Started: 2025-12-11 06:17:24
Settings
Chain sequence(s) A: QDKCKKVYENYPVSKCQLANQCNYDCKLDKHARSGECFADEKRNLQCICDYCEY
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:12)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:12)
Show buried residues

Minimal score value
-3.7794
Maximal score value
0.5752
Average score
-1.1301
Total score value
-61.0267

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -2.4556
2 D A -3.2625
3 K A -3.3781
4 C A -2.4318
5 K A -2.4909
6 K A -1.5768
7 V A 0.2073
8 Y A -0.9168
9 E A -1.9589
10 N A -1.7513
11 Y A -0.6964
12 P A -0.4862
13 V A 0.4253
14 S A -0.1015
15 K A -0.4538
16 C A -0.3970
17 Q A -0.7252
18 L A 0.2005
19 A A -0.4751
20 N A -1.2987
21 Q A -0.7384
22 C A 0.0000
23 N A -0.7025
24 Y A 0.0510
25 D A 0.0000
26 C A 0.0000
27 K A -1.3213
28 L A -0.1503
29 D A -1.8263
30 K A -2.2315
31 H A -1.9570
32 A A 0.0000
33 R A -1.4004
34 S A -1.3664
35 G A -1.4451
36 E A -1.3890
37 C A -0.0767
38 F A 0.5752
39 A A -0.9104
40 D A -2.2313
41 E A -3.3763
42 K A -3.7794
43 R A -3.5108
44 N A -2.1010
45 L A -0.8189
46 Q A -0.1831
47 C A 0.0000
48 I A -0.2957
49 C A 0.0000
50 D A -1.9030
51 Y A -1.5101
52 C A -1.0797
53 E A -1.4238
54 Y A 0.0990
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Laboratory of Theory of Biopolymers 2018