| Chain sequence(s) |
A: QVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMGWFRQAPGQGLEAVAAISSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAADRAAGGRRVYEYNYWGQGTLVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:02)
[INFO] Main: Simulation completed successfully. (00:01:03)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.5487 | |
| 2 | V | A | -1.1269 | |
| 3 | Q | A | -1.1005 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.1286 | |
| 6 | E | A | 0.5120 | |
| 7 | S | A | -0.0891 | |
| 8 | G | A | -0.8409 | |
| 9 | G | A | 0.1261 | |
| 10 | G | A | 0.6846 | |
| 11 | L | A | 1.4268 | |
| 12 | V | A | -0.1081 | |
| 13 | Q | A | -1.4479 | |
| 14 | P | A | -1.8138 | |
| 15 | G | A | -1.5478 | |
| 16 | G | A | -1.0154 | |
| 17 | S | A | -1.2878 | |
| 18 | L | A | -0.8966 | |
| 19 | R | A | -2.1228 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.3887 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.1386 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.9429 | |
| 26 | G | A | -1.0679 | |
| 27 | F | A | -0.6488 | |
| 28 | T | A | -0.5166 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | -0.9677 | |
| 31 | S | A | -0.7884 | |
| 32 | Y | A | 0.0000 | |
| 33 | A | A | 0.0000 | |
| 34 | M | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | 0.3945 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -0.4054 | |
| 40 | A | A | -0.8624 | |
| 41 | P | A | -0.9678 | |
| 42 | G | A | -1.2206 | |
| 43 | Q | A | -1.6834 | |
| 44 | G | A | -0.8985 | |
| 45 | L | A | 0.3102 | |
| 46 | E | A | -0.3807 | |
| 47 | A | A | 0.1582 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.3312 | |
| 51 | I | A | 0.0000 | |
| 52 | S | A | -0.5997 | |
| 53 | S | A | -0.9534 | |
| 54 | G | A | -0.8030 | |
| 55 | G | A | -0.6734 | |
| 56 | S | A | -0.3494 | |
| 57 | T | A | 0.2222 | |
| 58 | Y | A | 0.6572 | |
| 59 | Y | A | -0.3143 | |
| 60 | A | A | 0.0000 | |
| 61 | D | A | -2.3611 | |
| 62 | S | A | -1.7680 | |
| 63 | V | A | 0.0000 | |
| 64 | K | A | -2.4742 | |
| 65 | G | A | -1.7645 | |
| 66 | R | A | -1.7328 | |
| 67 | F | A | 0.0000 | |
| 68 | T | A | -0.7361 | |
| 69 | I | A | 0.0000 | |
| 70 | S | A | -0.4640 | |
| 71 | R | A | -1.2739 | |
| 72 | D | A | -2.0053 | |
| 73 | N | A | -2.2046 | |
| 74 | S | A | -1.8717 | |
| 75 | K | A | -2.5884 | |
| 76 | N | A | -1.9765 | |
| 77 | T | A | 0.0000 | |
| 78 | L | A | 0.0000 | |
| 79 | Y | A | -0.6581 | |
| 80 | L | A | 0.0000 | |
| 81 | Q | A | -1.2881 | |
| 82 | M | A | 0.0000 | |
| 83 | N | A | -1.5465 | |
| 84 | S | A | -1.4438 | |
| 85 | L | A | 0.0000 | |
| 86 | R | A | -2.9536 | |
| 87 | A | A | -2.0278 | |
| 88 | E | A | -2.4595 | |
| 89 | D | A | 0.0000 | |
| 90 | T | A | -0.4852 | |
| 91 | A | A | 0.0000 | |
| 92 | V | A | 0.9549 | |
| 93 | Y | A | 0.0000 | |
| 94 | Y | A | 0.5354 | |
| 95 | C | A | 0.0000 | |
| 96 | A | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | D | A | -1.2778 | |
| 99 | R | A | -2.2704 | |
| 100 | A | A | -1.5065 | |
| 101 | A | A | -1.6981 | |
| 102 | G | A | -1.5790 | |
| 103 | G | A | -1.7936 | |
| 104 | R | A | -2.4763 | |
| 105 | R | A | -1.9402 | |
| 106 | V | A | 0.3063 | |
| 107 | Y | A | 0.1026 | |
| 108 | E | A | -1.7522 | |
| 109 | Y | A | -0.9198 | |
| 110 | N | A | -1.6226 | |
| 111 | Y | A | -0.6490 | |
| 112 | W | A | 0.2035 | |
| 113 | G | A | -0.0033 | |
| 114 | Q | A | -0.8231 | |
| 115 | G | A | 0.1564 | |
| 116 | T | A | 0.6408 | |
| 117 | L | A | 1.7361 | |
| 118 | V | A | 0.0000 | |
| 119 | T | A | 0.3163 | |
| 120 | V | A | 0.0000 | |
| 121 | S | A | -0.7783 | |
| 122 | S | A | -0.5014 |