| Chain sequence(s) |
A: FFKGHFF
C: FFKGHFF B: FFKGHFF E: FFKGHFF D: FFKGHFF G: FFKGHFF F: FFKGHFF I: FFKGHFF H: FFKGHFF K: FFKGHFF J: FFKGHFF L: FFKGHFF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:08:32)
[INFO] Main: Simulation completed successfully. (00:08:37)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 0.0000 | |
| 2 | F | A | 0.0000 | |
| 3 | K | A | -0.9427 | |
| 4 | G | A | -0.1061 | |
| 5 | H | A | 0.4902 | |
| 6 | F | A | 2.8051 | |
| 7 | F | A | 2.9817 | |
| 1 | F | B | 0.7507 | |
| 2 | F | B | 0.3991 | |
| 3 | K | B | -0.5242 | |
| 4 | G | B | 0.0000 | |
| 5 | H | B | 0.7350 | |
| 6 | F | B | 2.4427 | |
| 7 | F | B | 3.1914 | |
| 1 | F | C | 0.7436 | |
| 2 | F | C | 0.0000 | |
| 3 | K | C | -0.5505 | |
| 4 | G | C | 0.0000 | |
| 5 | H | C | 1.4508 | |
| 6 | F | C | 3.2715 | |
| 7 | F | C | 3.5134 | |
| 1 | F | D | 0.7027 | |
| 2 | F | D | -0.2855 | |
| 3 | K | D | -0.7386 | |
| 4 | G | D | 0.0000 | |
| 5 | H | D | 0.8262 | |
| 6 | F | D | 3.2005 | |
| 7 | F | D | 3.4625 | |
| 1 | F | E | 0.0000 | |
| 2 | F | E | 0.0000 | |
| 3 | K | E | -0.9438 | |
| 4 | G | E | 0.0000 | |
| 5 | H | E | 0.6837 | |
| 6 | F | E | 3.2887 | |
| 7 | F | E | 3.3143 | |
| 1 | F | F | 0.0000 | |
| 2 | F | F | 0.0000 | |
| 3 | K | F | -1.0105 | |
| 4 | G | F | 0.0000 | |
| 5 | H | F | 1.0064 | |
| 6 | F | F | 3.2719 | |
| 7 | F | F | 3.4819 | |
| 1 | F | G | 0.0000 | |
| 2 | F | G | 0.0000 | |
| 3 | K | G | -1.1490 | |
| 4 | G | G | 0.0000 | |
| 5 | H | G | 0.7764 | |
| 6 | F | G | 2.2843 | |
| 7 | F | G | 3.0495 | |
| 1 | F | H | 0.8279 | |
| 2 | F | H | 0.0000 | |
| 3 | K | H | -0.6703 | |
| 4 | G | H | 0.0000 | |
| 5 | H | H | 0.7625 | |
| 6 | F | H | 2.3771 | |
| 7 | F | H | 2.9795 | |
| 1 | F | I | 0.7602 | |
| 2 | F | I | -0.0091 | |
| 3 | K | I | -0.6894 | |
| 4 | G | I | 0.0000 | |
| 5 | H | I | 0.8135 | |
| 6 | F | I | 2.8139 | |
| 7 | F | I | 3.1775 | |
| 1 | F | J | 0.7577 | |
| 2 | F | J | 0.0000 | |
| 3 | K | J | -0.9694 | |
| 4 | G | J | 0.0000 | |
| 5 | H | J | 0.2421 | |
| 6 | F | J | 2.6737 | |
| 7 | F | J | 3.0939 | |
| 1 | F | K | 0.8030 | |
| 2 | F | K | 0.0000 | |
| 3 | K | K | -1.5392 | |
| 4 | G | K | 0.0000 | |
| 5 | H | K | -0.1473 | |
| 6 | F | K | 2.2242 | |
| 7 | F | K | 3.0287 | |
| 1 | F | L | 0.6723 | |
| 2 | F | L | -0.2397 | |
| 3 | K | L | -1.2624 | |
| 4 | G | L | 0.0000 | |
| 5 | H | L | 0.7329 | |
| 6 | F | L | 2.5497 | |
| 7 | F | L | 3.0192 |