| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCSASGFPVWESYMAWYRQAPGKEREWVAAIDSHGEKTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDNGNVWWAWYDYWGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:23)
[INFO] Main: Simulation completed successfully. (00:01:24)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.5274 | |
| 2 | V | A | -0.8198 | |
| 3 | Q | A | -1.0154 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.9520 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.6167 | |
| 8 | G | A | -1.0335 | |
| 9 | G | A | -0.8321 | |
| 10 | G | A | -0.0689 | |
| 11 | L | A | 0.9267 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.3553 | |
| 14 | A | A | -1.5302 | |
| 15 | G | A | -1.4108 | |
| 16 | G | A | -0.9416 | |
| 17 | S | A | -1.2450 | |
| 18 | L | A | -0.9410 | |
| 19 | R | A | -2.1397 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.5270 | |
| 22 | C | A | 0.0000 | |
| 23 | S | A | -0.3427 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.7883 | |
| 26 | G | A | -1.0680 | |
| 27 | F | A | 0.0000 | |
| 28 | P | A | -0.4359 | |
| 29 | V | A | 0.0000 | |
| 30 | W | A | -0.1383 | |
| 31 | E | A | -0.2839 | |
| 32 | S | A | 0.0000 | |
| 33 | Y | A | -1.0528 | |
| 34 | M | A | 0.0000 | |
| 35 | A | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.3250 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -2.0477 | |
| 40 | A | A | -2.0138 | |
| 41 | P | A | -1.4269 | |
| 42 | G | A | -1.9748 | |
| 43 | K | A | -3.3610 | |
| 44 | E | A | -3.5434 | |
| 45 | R | A | -2.7091 | |
| 46 | E | A | -1.7539 | |
| 47 | W | A | -0.4472 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | D | A | -1.5366 | |
| 53 | S | A | -1.2833 | |
| 54 | H | A | -1.9532 | |
| 55 | G | A | -2.2921 | |
| 56 | E | A | -3.0836 | |
| 57 | K | A | -2.7562 | |
| 58 | T | A | -1.0365 | |
| 59 | Y | A | -0.1882 | |
| 60 | Y | A | -0.5861 | |
| 61 | A | A | -1.2328 | |
| 62 | D | A | -2.3838 | |
| 63 | S | A | -1.7959 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5700 | |
| 66 | G | A | -1.7961 | |
| 67 | R | A | -1.5305 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.8012 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -1.2785 | |
| 72 | R | A | -1.9618 | |
| 73 | D | A | -2.2029 | |
| 74 | N | A | -2.3793 | |
| 75 | A | A | -1.6860 | |
| 76 | K | A | -2.5966 | |
| 77 | N | A | -1.8395 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.9198 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2651 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.4167 | |
| 85 | S | A | -1.2672 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.6062 | |
| 88 | P | A | -2.0500 | |
| 89 | E | A | -2.4392 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.0122 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.5585 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.1428 | |
| 96 | C | A | 0.0000 | |
| 97 | N | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | K | A | -1.6555 | |
| 100 | D | A | -2.2284 | |
| 101 | N | A | -1.9158 | |
| 102 | G | A | -1.4347 | |
| 103 | N | A | -1.4732 | |
| 104 | V | A | -0.1598 | |
| 105 | W | A | 1.3179 | |
| 106 | W | A | 0.7058 | |
| 107 | A | A | 0.0000 | |
| 108 | W | A | 1.0006 | |
| 109 | Y | A | 0.9448 | |
| 110 | D | A | -1.2159 | |
| 111 | Y | A | -0.5008 | |
| 112 | W | A | -0.0933 | |
| 113 | G | A | -0.1068 | |
| 114 | Q | A | -0.9339 | |
| 115 | G | A | 0.0000 | |
| 116 | T | A | 0.0000 | |
| 117 | Q | A | -1.1452 | |
| 118 | V | A | 0.0000 | |
| 119 | T | A | -0.3797 | |
| 120 | V | A | 0.0000 | |
| 121 | S | A | -0.8293 |