Project name: query_structure

Status: done

Started: 2026-03-17 00:50:55
Settings
Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSCSASGFPVWESYMAWYRQAPGKEREWVAAIDSHGEKTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDNGNVWWAWYDYWGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:23)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:24)
Show buried residues

Minimal score value
-3.5434
Maximal score value
1.3179
Average score
-0.8462
Total score value
-102.39

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.5274
2 V A -0.8198
3 Q A -1.0154
4 L A 0.0000
5 V A 0.9520
6 E A 0.0000
7 S A -0.6167
8 G A -1.0335
9 G A -0.8321
10 G A -0.0689
11 L A 0.9267
12 V A 0.0000
13 Q A -1.3553
14 A A -1.5302
15 G A -1.4108
16 G A -0.9416
17 S A -1.2450
18 L A -0.9410
19 R A -2.1397
20 L A 0.0000
21 S A -0.5270
22 C A 0.0000
23 S A -0.3427
24 A A 0.0000
25 S A -0.7883
26 G A -1.0680
27 F A 0.0000
28 P A -0.4359
29 V A 0.0000
30 W A -0.1383
31 E A -0.2839
32 S A 0.0000
33 Y A -1.0528
34 M A 0.0000
35 A A 0.0000
36 W A 0.0000
37 Y A -0.3250
38 R A 0.0000
39 Q A -2.0477
40 A A -2.0138
41 P A -1.4269
42 G A -1.9748
43 K A -3.3610
44 E A -3.5434
45 R A -2.7091
46 E A -1.7539
47 W A -0.4472
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 D A -1.5366
53 S A -1.2833
54 H A -1.9532
55 G A -2.2921
56 E A -3.0836
57 K A -2.7562
58 T A -1.0365
59 Y A -0.1882
60 Y A -0.5861
61 A A -1.2328
62 D A -2.3838
63 S A -1.7959
64 V A 0.0000
65 K A -2.5700
66 G A -1.7961
67 R A -1.5305
68 F A 0.0000
69 T A -0.8012
70 I A 0.0000
71 S A -1.2785
72 R A -1.9618
73 D A -2.2029
74 N A -2.3793
75 A A -1.6860
76 K A -2.5966
77 N A -1.8395
78 T A 0.0000
79 V A 0.0000
80 Y A -0.9198
81 L A 0.0000
82 Q A -1.2651
83 M A 0.0000
84 N A -1.4167
85 S A -1.2672
86 L A 0.0000
87 K A -2.6062
88 P A -2.0500
89 E A -2.4392
90 D A 0.0000
91 T A -1.0122
92 A A 0.0000
93 V A -0.5585
94 Y A 0.0000
95 Y A -0.1428
96 C A 0.0000
97 N A 0.0000
98 V A 0.0000
99 K A -1.6555
100 D A -2.2284
101 N A -1.9158
102 G A -1.4347
103 N A -1.4732
104 V A -0.1598
105 W A 1.3179
106 W A 0.7058
107 A A 0.0000
108 W A 1.0006
109 Y A 0.9448
110 D A -1.2159
111 Y A -0.5008
112 W A -0.0933
113 G A -0.1068
114 Q A -0.9339
115 G A 0.0000
116 T A 0.0000
117 Q A -1.1452
118 V A 0.0000
119 T A -0.3797
120 V A 0.0000
121 S A -0.8293
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Laboratory of Theory of Biopolymers 2018