Project name: sol_331_1st

Status: done

Started: 2024-06-18 22:31:13
Settings
Chain sequence(s) A: EFKLPENFGKRESDLRLSVLLVEMLKNINLRLGCQLSREEIEKVKKDPKKINLALEAVFNERPKIALELAEKLRLKNIESLALLLCGVSPSGNLGIEYAAKVDANLELVYVIWIENNKYFNKHFPELIKKYSKGIYPEDLTDKVPYKGIEISIKLVTEPIEEGIKIREEDPSLLKPLLEELEKKIEELREEVKRLSEENVGDTLKYSKDPRILEAARKFPLLMYEKGKEIAKEKGLSEEDILGIAVLVADVNVQLCSTILNVAFPLEVIGRIFFFPLILMEETEKFFEEFVEEYKKKKEEKL
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:07:41)
[INFO]       Main:     Simulation completed successfully.                                          (00:07:43)
Show buried residues

Minimal score value
-5.2981
Maximal score value
1.3738
Average score
-1.3697
Total score value
-413.6507

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E A -2.0877
2 F A -1.5225
3 K A -2.3402
4 L A -1.1347
5 P A -1.6237
6 E A -2.8195
7 N A -2.8879
8 F A -1.7444
9 G A -1.7588
10 K A -2.7789
11 R A -2.6606
12 E A -2.5840
13 S A -1.7307
14 D A -1.4213
15 L A -0.1805
16 R A -1.0769
17 L A -0.3601
18 S A 0.6431
19 V A 1.3738
20 L A 0.7311
21 L A 1.1249
22 V A 1.0539
23 E A 0.0350
24 M A -0.3149
25 L A 0.2174
26 K A -0.9815
27 N A 0.0000
28 I A 0.0000
29 N A 0.0000
30 L A -0.8092
31 R A -0.9046
32 L A 0.0000
33 G A 0.0000
34 C A 0.0000
35 Q A -0.3780
36 L A 0.0000
37 S A -2.2387
38 R A -2.9620
39 E A -3.5900
40 E A -3.8345
41 I A 0.0000
42 E A -4.4426
43 K A -4.5747
44 V A -3.6661
45 K A -4.2596
46 K A -4.1106
47 D A -3.4199
48 P A -2.5823
49 K A -2.8360
50 K A -2.1169
51 I A 0.0000
52 N A -2.5034
53 L A -1.6840
54 A A 0.0000
55 L A 0.0000
56 E A -2.2620
57 A A 0.0000
58 V A 0.0000
59 F A 0.0000
60 N A -1.8036
61 E A -1.7522
62 R A 0.0000
63 P A 0.0000
64 K A -1.8952
65 I A -1.3638
66 A A 0.0000
67 L A -1.6656
68 E A -3.1919
69 L A 0.0000
70 A A 0.0000
71 E A -4.1026
72 K A -3.5146
73 L A -2.7983
74 R A -3.6820
75 L A -2.5484
76 K A -2.7474
77 N A -2.2187
78 I A -0.4422
79 E A 0.0000
80 S A 0.0000
81 L A 0.0000
82 A A 0.0000
83 L A 0.0000
84 L A 0.0000
85 L A 0.0000
86 C A 0.0000
87 G A 0.0000
88 V A 0.0000
89 S A 0.0000
90 P A 0.0000
91 S A 0.0000
92 G A 0.0000
93 N A -0.2688
94 L A 0.0000
95 G A 0.0000
96 I A 0.0000
97 E A 0.0000
98 Y A 0.0000
99 A A 0.0000
100 A A -0.8589
101 K A -1.9586
102 V A 0.0000
103 D A -2.1003
104 A A -1.6808
105 N A -1.3097
106 L A -0.5834
107 E A -1.4183
108 L A 0.0000
109 V A 0.0000
110 Y A 0.0000
111 V A 0.0000
112 I A 0.0000
113 W A 0.0000
114 I A -0.5940
115 E A -1.6662
116 N A 0.0000
117 N A 0.0000
118 K A -2.3792
119 Y A -1.2373
120 F A 0.0000
121 N A -1.9564
122 K A -2.3467
123 H A -1.7196
124 F A 0.0000
125 P A -2.3151
126 E A -2.8947
127 L A 0.0000
128 I A 0.0000
129 K A -3.3803
130 K A -3.1033
131 Y A 0.0000
132 S A 0.0000
133 K A -2.6991
134 G A -1.2904
135 I A -1.1124
136 Y A -1.3831
137 P A -1.8848
138 E A -3.0108
139 D A -3.2982
140 L A 0.0000
141 T A -2.1566
142 D A -2.1566
143 K A -1.2787
144 V A 0.0000
145 P A -0.9361
146 Y A -1.2766
147 K A -1.8488
148 G A -1.1215
149 I A 0.0000
150 E A -1.7997
151 I A -0.2656
152 S A -0.4022
153 I A 0.0000
154 K A -1.5077
155 L A -0.8407
156 V A 0.0000
157 T A -1.5168
158 E A -2.8196
159 P A -2.1145
160 I A 0.0000
161 E A -2.2874
162 E A -2.9375
163 G A 0.0000
164 I A 0.0000
165 K A -3.4491
166 I A -2.4670
167 R A -2.9558
168 E A -3.8032
169 E A -3.6692
170 D A -2.9091
171 P A -2.0688
172 S A -0.9425
173 L A -0.2399
174 L A -1.0163
175 K A -1.9653
176 P A -1.4990
177 L A -1.2263
178 L A -2.0202
179 E A -3.8116
180 E A -3.9191
181 L A 0.0000
182 E A -4.0784
183 K A -4.8224
184 K A -4.1370
185 I A 0.0000
186 E A -4.5221
187 E A -4.4516
188 L A -2.9998
189 R A -3.2739
190 E A -4.1573
191 E A -3.1932
192 V A -2.6430
193 K A -3.5096
194 R A -3.6092
195 L A 0.0000
196 S A -2.6273
197 E A -3.7408
198 E A -3.4960
199 N A 0.0000
200 V A -1.6165
201 G A -2.5132
202 D A -2.6733
203 T A -1.5494
204 L A -1.1695
205 K A -1.9763
206 Y A -0.4785
207 S A 0.0000
208 K A -1.2316
209 D A -1.3016
210 P A -1.0702
211 R A -1.7172
212 I A 0.0000
213 L A -1.3899
214 E A -2.2946
215 A A 0.0000
216 A A 0.0000
217 R A -2.5148
218 K A -1.5633
219 F A 0.0000
220 P A 0.0000
221 L A 0.1351
222 L A -0.2053
223 M A 0.0000
224 Y A 0.0000
225 E A -2.4610
226 K A -2.3393
227 G A 0.0000
228 K A -3.4399
229 E A -4.1238
230 I A -3.0642
231 A A 0.0000
232 K A -4.3163
233 E A -3.9483
234 K A -3.3574
235 G A -2.4374
236 L A -2.0970
237 S A -1.8747
238 E A -3.0423
239 E A -2.4617
240 D A 0.0000
241 I A 0.0000
242 L A 0.0000
243 G A 0.0000
244 I A 0.0000
245 A A 0.0000
246 V A 0.0000
247 L A 0.0000
248 V A 0.0000
249 A A 0.0000
250 D A 0.0000
251 V A 0.0000
252 N A -0.5483
253 V A 0.0000
254 Q A -1.1498
255 L A 0.0000
256 C A 0.0000
257 S A -0.4414
258 T A -0.4702
259 I A 0.0000
260 L A 0.0000
261 N A -0.4392
262 V A 0.5153
263 A A -0.4795
264 F A 0.0000
265 P A -0.0405
266 L A -0.4086
267 E A -1.1917
268 V A 0.8514
269 I A 0.0000
270 G A -0.8207
271 R A -1.2033
272 I A 0.0000
273 F A 0.0125
274 F A 0.0000
275 F A 0.0000
276 P A 0.0000
277 L A 0.4585
278 I A 0.0000
279 L A 0.0000
280 M A -0.3683
281 E A -0.7703
282 E A 0.0000
283 T A 0.0000
284 E A -1.5712
285 K A -2.4635
286 F A -1.7212
287 F A 0.0000
288 E A -3.7778
289 E A -3.7991
290 F A -2.5629
291 V A 0.0000
292 E A -4.5999
293 E A -4.3227
294 Y A -3.6844
295 K A -4.5289
296 K A -5.2981
297 K A -4.9648
298 K A -4.2761
299 E A -4.3938
300 E A -4.3719
301 K A -3.2627
302 L A -0.7920
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Laboratory of Theory of Biopolymers 2018