| Chain sequence(s) |
A: SGHKGHK
C: SGHKGHK B: SGHKGHK E: SGHKGHK D: SGHKGHK G: SGHKGHK F: SGHKGHK I: SGHKGHK H: SGHKGHK K: SGHKGHK J: SGHKGHK M: SGHKGHK L: SGHKGHK O: SGHKGHK N: SGHKGHK Q: SGHKGHK P: SGHKGHK S: SGHKGHK R: SGHKGHK T: SGHKGHK input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:07:20)
[INFO] Main: Simulation completed successfully. (00:07:23)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | S | A | -0.8357 | |
| 2 | G | A | -1.0440 | |
| 3 | H | A | 0.0000 | |
| 4 | K | A | -1.4619 | |
| 5 | G | A | 0.0000 | |
| 6 | H | A | -2.4028 | |
| 7 | K | A | -3.0642 | |
| 1 | S | B | -0.8602 | |
| 2 | G | B | -1.1398 | |
| 3 | H | B | 0.0000 | |
| 4 | K | B | -1.5112 | |
| 5 | G | B | 0.0000 | |
| 6 | H | B | -2.1670 | |
| 7 | K | B | -3.0611 | |
| 1 | S | C | -0.8700 | |
| 2 | G | C | -1.1841 | |
| 3 | H | C | 0.0000 | |
| 4 | K | C | -1.8248 | |
| 5 | G | C | 0.0000 | |
| 6 | H | C | -2.0808 | |
| 7 | K | C | -2.4408 | |
| 1 | S | D | -0.8990 | |
| 2 | G | D | -1.3189 | |
| 3 | H | D | 0.0000 | |
| 4 | K | D | -2.0361 | |
| 5 | G | D | 0.0000 | |
| 6 | H | D | -2.5926 | |
| 7 | K | D | -3.3828 | |
| 1 | S | E | -1.0204 | |
| 2 | G | E | -1.7267 | |
| 3 | H | E | 0.0000 | |
| 4 | K | E | -2.9533 | |
| 5 | G | E | -3.2716 | |
| 6 | H | E | -3.5140 | |
| 7 | K | E | -3.8273 | |
| 1 | S | F | -0.7620 | |
| 2 | G | F | -1.7648 | |
| 3 | H | F | -2.4868 | |
| 4 | K | F | -3.2276 | |
| 5 | G | F | -2.8298 | |
| 6 | H | F | -3.1802 | |
| 7 | K | F | -3.2446 | |
| 1 | S | G | -1.0563 | |
| 2 | G | G | -1.7237 | |
| 3 | H | G | -2.2476 | |
| 4 | K | G | -2.5285 | |
| 5 | G | G | 0.0000 | |
| 6 | H | G | -2.5884 | |
| 7 | K | G | -2.6688 | |
| 1 | S | H | -0.8746 | |
| 2 | G | H | -1.4377 | |
| 3 | H | H | 0.0000 | |
| 4 | K | H | -2.2275 | |
| 5 | G | H | 0.0000 | |
| 6 | H | H | -2.5538 | |
| 7 | K | H | -2.4385 | |
| 1 | S | I | -0.8264 | |
| 2 | G | I | -1.2741 | |
| 3 | H | I | 0.0000 | |
| 4 | K | I | -2.0601 | |
| 5 | G | I | 0.0000 | |
| 6 | H | I | -2.3860 | |
| 7 | K | I | -2.9971 | |
| 1 | S | J | -0.9756 | |
| 2 | G | J | -1.4003 | |
| 3 | H | J | -1.8603 | |
| 4 | K | J | -2.0653 | |
| 5 | G | J | 0.0000 | |
| 6 | H | J | -2.3714 | |
| 7 | K | J | -2.5201 | |
| 1 | S | K | -0.9031 | |
| 2 | G | K | -1.2901 | |
| 3 | H | K | 0.0000 | |
| 4 | K | K | -1.7701 | |
| 5 | G | K | 0.0000 | |
| 6 | H | K | -2.2370 | |
| 7 | K | K | -3.0083 | |
| 1 | S | L | -0.7302 | |
| 2 | G | L | -1.0942 | |
| 3 | H | L | 0.0000 | |
| 4 | K | L | -1.6203 | |
| 5 | G | L | 0.0000 | |
| 6 | H | L | -2.1603 | |
| 7 | K | L | -2.5741 | |
| 1 | S | M | -0.7545 | |
| 2 | G | M | -1.2893 | |
| 3 | H | M | 0.0000 | |
| 4 | K | M | -2.0754 | |
| 5 | G | M | 0.0000 | |
| 6 | H | M | -2.0854 | |
| 7 | K | M | -2.1970 | |
| 1 | S | N | -0.8699 | |
| 2 | G | N | -1.1559 | |
| 3 | H | N | 0.0000 | |
| 4 | K | N | -1.4369 | |
| 5 | G | N | 0.0000 | |
| 6 | H | N | -1.9808 | |
| 7 | K | N | -2.5628 | |
| 1 | S | O | -0.7191 | |
| 2 | G | O | -1.0015 | |
| 3 | H | O | 0.0000 | |
| 4 | K | O | -1.4547 | |
| 5 | G | O | 0.0000 | |
| 6 | H | O | -1.5064 | |
| 7 | K | O | -1.8716 | |
| 1 | S | P | -0.8687 | |
| 2 | G | P | -1.2007 | |
| 3 | H | P | 0.0000 | |
| 4 | K | P | -1.5863 | |
| 5 | G | P | 0.0000 | |
| 6 | H | P | -1.7078 | |
| 7 | K | P | -2.1512 | |
| 1 | S | Q | -0.9268 | |
| 2 | G | Q | -1.3531 | |
| 3 | H | Q | -1.9536 | |
| 4 | K | Q | -1.9923 | |
| 5 | G | Q | 0.0000 | |
| 6 | H | Q | -2.4503 | |
| 7 | K | Q | -3.1904 | |
| 1 | S | R | -0.8435 | |
| 2 | G | R | -1.6267 | |
| 3 | H | R | -2.3094 | |
| 4 | K | R | -2.7777 | |
| 5 | G | R | -2.9812 | |
| 6 | H | R | -3.2301 | |
| 7 | K | R | -3.6630 | |
| 1 | S | S | -0.7932 | |
| 2 | G | S | -1.6169 | |
| 3 | H | S | -2.5832 | |
| 4 | K | S | -3.2536 | |
| 5 | G | S | -3.0638 | |
| 6 | H | S | -3.1423 | |
| 7 | K | S | -3.2412 | |
| 1 | S | T | -0.9031 | |
| 2 | G | T | -1.4487 | |
| 3 | H | T | -2.0667 | |
| 4 | K | T | -2.4566 | |
| 5 | G | T | -2.2948 | |
| 6 | H | T | -2.1579 | |
| 7 | K | T | -2.5158 |