| Chain sequence(s) |
A: QVQLLESGGGLVQPGGSLRLSCAASGGTFTNYKMGWFRQAPGKGREFVAHITWSGASTDYADSVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYYCVAKYWRNEGYLSDYPYWGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:08)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:08)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:08)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:08)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:08)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:41)
[INFO] Main: Simulation completed successfully. (00:01:42)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4862 | |
| 2 | V | A | -0.9784 | |
| 3 | Q | A | -0.9686 | |
| 4 | L | A | 0.0000 | |
| 5 | L | A | 0.4159 | |
| 6 | E | A | -0.2577 | |
| 7 | S | A | -0.6920 | |
| 8 | G | A | -1.0414 | |
| 9 | G | A | -0.8444 | |
| 10 | G | A | -0.0937 | |
| 11 | L | A | 0.9158 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.3362 | |
| 14 | P | A | -1.4967 | |
| 15 | G | A | -1.3364 | |
| 16 | G | A | -0.9507 | |
| 17 | S | A | -1.3039 | |
| 18 | L | A | -1.0556 | |
| 19 | R | A | -2.1383 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.5674 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.3005 | |
| 24 | A | A | -0.5296 | |
| 25 | S | A | -0.7385 | |
| 26 | G | A | -1.1838 | |
| 27 | G | A | -0.8740 | |
| 28 | T | A | -0.4205 | |
| 29 | F | A | 0.0000 | |
| 30 | T | A | -0.3891 | |
| 31 | N | A | -0.3869 | |
| 32 | Y | A | 0.0000 | |
| 33 | K | A | -0.4161 | |
| 34 | M | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | 0.0000 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -1.7828 | |
| 40 | A | A | -1.7335 | |
| 41 | P | A | -1.2294 | |
| 42 | G | A | -1.6962 | |
| 43 | K | A | -2.6947 | |
| 44 | G | A | -2.3812 | |
| 45 | R | A | -2.4824 | |
| 46 | E | A | -1.4876 | |
| 47 | F | A | -0.5176 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | H | A | -0.5274 | |
| 51 | I | A | 0.0000 | |
| 52 | T | A | -0.3721 | |
| 53 | W | A | -0.1432 | |
| 54 | S | A | -0.3441 | |
| 55 | G | A | -0.4751 | |
| 56 | A | A | -0.1392 | |
| 57 | S | A | -0.5528 | |
| 58 | T | A | -0.9158 | |
| 59 | D | A | -1.8219 | |
| 60 | Y | A | -1.5682 | |
| 61 | A | A | -1.5887 | |
| 62 | D | A | -2.6190 | |
| 63 | S | A | -1.7026 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.8301 | |
| 66 | G | A | -1.7854 | |
| 67 | R | A | -1.5875 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -1.0439 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.4228 | |
| 72 | R | A | -0.8867 | |
| 73 | D | A | -1.4443 | |
| 74 | N | A | -1.4839 | |
| 75 | A | A | -1.3048 | |
| 76 | K | A | -2.2070 | |
| 77 | N | A | -1.6340 | |
| 78 | T | A | -0.9947 | |
| 79 | L | A | 0.0000 | |
| 80 | Y | A | -0.5694 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2602 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.5081 | |
| 85 | S | A | -1.2030 | |
| 86 | L | A | 0.0000 | |
| 87 | R | A | -2.0617 | |
| 88 | A | A | -1.6031 | |
| 89 | E | A | -2.1595 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.8154 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.4823 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.3527 | |
| 96 | C | A | 0.0000 | |
| 97 | V | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | K | A | 0.0000 | |
| 100 | Y | A | -0.4986 | |
| 101 | W | A | -1.0225 | |
| 102 | R | A | -2.5776 | |
| 103 | N | A | -2.6551 | |
| 104 | E | A | -2.6956 | |
| 105 | G | A | -1.3164 | |
| 106 | Y | A | 0.4653 | |
| 107 | L | A | 0.2764 | |
| 108 | S | A | -0.3073 | |
| 109 | D | A | -1.0457 | |
| 110 | Y | A | 0.0000 | |
| 111 | P | A | -0.1679 | |
| 112 | Y | A | 0.1249 | |
| 113 | W | A | 0.1644 | |
| 114 | G | A | -0.2831 | |
| 115 | Q | A | -1.0086 | |
| 116 | G | A | -0.6759 | |
| 117 | T | A | -0.8056 | |
| 118 | Q | A | -0.9881 | |
| 119 | V | A | 0.0000 | |
| 120 | T | A | -0.2835 | |
| 121 | V | A | 0.0000 | |
| 122 | S | A | -0.6915 | |
| 123 | S | A | -0.4970 |