| Chain sequence(s) |
A: FFKGHFF
C: FFKGHFF B: FFKGHFF D: FFKGHFF input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:43)
[INFO] Main: Simulation completed successfully. (00:00:44)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 3.5633 | |
| 2 | F | A | 1.9684 | |
| 3 | K | A | -1.1800 | |
| 4 | G | A | -1.2775 | |
| 5 | H | A | -0.5697 | |
| 6 | F | A | 2.7107 | |
| 7 | F | A | 2.9948 | |
| 1 | F | B | 3.0775 | |
| 2 | F | B | 1.0554 | |
| 3 | K | B | -1.3823 | |
| 4 | G | B | -1.3626 | |
| 5 | H | B | -0.6795 | |
| 6 | F | B | 2.0720 | |
| 7 | F | B | 3.0819 | |
| 1 | F | C | 3.2071 | |
| 2 | F | C | 2.3860 | |
| 3 | K | C | -0.7946 | |
| 4 | G | C | -1.1116 | |
| 5 | H | C | -0.6256 | |
| 6 | F | C | 1.7412 | |
| 7 | F | C | 3.1070 | |
| 1 | F | D | 2.8000 | |
| 2 | F | D | 1.4016 | |
| 3 | K | D | -1.2473 | |
| 4 | G | D | -1.1056 | |
| 5 | H | D | 0.0585 | |
| 6 | F | D | 2.7427 | |
| 7 | F | D | 3.1152 |