Project name: P=B

Status: done

Started: 2026-07-27 07:33:55
Settings
Chain sequence(s) A: KEGIYITGKAGTSVVNVYGINSTFSQEEIVNGHATLPDRTKGVFGGGVAIGYDFYDPFQLPVRLELDTTFRGETDAKGGQDIIAFGQPVHINVKNQVRMTTYIVNGYYDFHNSTAFTPYISAGVGLAHVKLSNNTIPVGFGINETLSASKNNFAWGAGIGAKYAVTDNIMIDASYKYINAGKVSISKNHYAGDEHTAYDADTKAASNDFMLGITYAF
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:09)
Show buried residues

Minimal score value
-2.316
Maximal score value
2.392
Average score
-0.0191
Total score value
-4.1539

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -2.0317
2 E A -2.1297
3 G A 0.0000
4 I A 0.5284
5 Y A 0.0000
6 I A 1.0088
7 T A 0.0000
8 G A -0.2110
9 K A -0.2914
10 A A -0.0420
11 G A -0.0684
12 T A 0.1819
13 S A 0.0000
14 V A 0.3797
15 V A 0.2886
16 N A -0.2268
17 V A 0.3543
18 Y A 0.2997
19 G A -0.2823
20 I A 0.0000
21 N A -1.2781
22 S A -0.2633
23 T A 0.1238
24 F A 0.7717
25 S A -0.1213
26 Q A -0.8550
27 E A -2.2283
28 E A -1.9392
29 I A 1.1428
30 V A 1.7566
31 N A -0.9784
32 G A -0.4126
33 H A -0.9974
34 A A -0.1433
35 T A 0.0486
36 L A 0.5473
37 P A -0.4730
38 D A -2.0573
39 R A -1.9121
40 T A -0.5708
41 K A -1.0322
42 G A -0.5376
43 V A 0.4982
44 F A 1.9782
45 G A 0.0000
46 G A -0.0986
47 G A 0.0863
48 V A 0.9442
49 A A 0.0000
50 I A 1.5749
51 G A 0.0000
52 Y A 0.3949
53 D A -0.1660
54 F A 0.4337
55 Y A 0.1191
56 D A -1.7360
57 P A -0.0955
58 F A 1.7070
59 Q A -0.6110
60 L A 0.8536
61 P A 0.1870
62 V A 0.3965
63 R A 0.0000
64 L A 0.7968
65 E A 0.0000
66 L A 1.4286
67 D A 0.0000
68 T A 0.0858
69 T A 0.0000
70 F A 0.9707
71 R A 0.0000
72 G A -0.5171
73 E A -1.8569
74 T A -0.6920
75 D A -1.7882
76 A A -0.6171
77 K A -1.7811
78 G A -0.8639
79 G A -0.7806
80 Q A -1.6175
81 D A -1.6426
82 I A 2.0540
83 I A 2.3920
84 A A 0.7773
85 F A 1.8681
86 G A -0.3313
87 Q A -1.3233
88 P A -0.1333
89 V A 1.5516
90 H A -0.3127
91 I A 1.6090
92 N A -0.5953
93 V A 1.2432
94 K A -1.5614
95 N A -1.4119
96 Q A -0.7621
97 V A 0.6175
98 R A -0.6036
99 M A 0.0000
100 T A 0.0000
101 T A 0.0000
102 Y A 0.8792
103 I A 0.0000
104 V A 1.1418
105 N A 0.0000
106 G A -0.0733
107 Y A 0.0000
108 Y A 0.8897
109 D A 0.0000
110 F A 1.0470
111 H A -0.4080
112 N A -1.3546
113 S A -0.4473
114 T A -0.1027
115 A A 0.3651
116 F A 2.0422
117 T A 0.3217
118 P A -0.1010
119 Y A 0.0000
120 I A 1.3815
121 S A 0.0000
122 A A 0.0529
123 G A 0.2809
124 V A 1.7760
125 G A 0.2746
126 L A 0.6025
127 A A 0.0000
128 H A -0.3248
129 V A 0.0000
130 K A -0.7778
131 L A 0.1599
132 S A -0.1668
133 N A -1.0913
134 N A -1.4407
135 T A 0.0600
136 I A 1.9782
137 P A 0.5656
138 V A 1.6677
139 G A 0.1959
140 F A 1.7751
141 G A 0.0173
142 I A 0.4557
143 N A -1.4597
144 E A -2.0621
145 T A -0.3063
146 L A 0.4804
147 S A -0.1185
148 A A -0.0517
149 S A -0.4966
150 K A -1.5597
151 N A -1.5600
152 N A -0.0254
153 F A 1.9587
154 A A 0.0000
155 W A 0.7944
156 G A 0.0000
157 A A 0.0284
158 G A 0.2685
159 I A 2.0376
160 G A 0.2883
161 A A -0.0161
162 K A 0.0000
163 Y A 1.0522
164 A A 0.4651
165 V A 1.4882
166 T A -0.1105
167 D A -1.8627
168 N A -0.5780
169 I A 0.5749
170 M A 0.3381
171 I A 0.7507
172 D A 0.0000
173 A A 0.1666
174 S A 0.0446
175 Y A 0.6002
176 K A -0.0342
177 Y A 0.4020
178 I A 0.0000
179 N A -0.2165
180 A A 0.0000
181 G A -0.3783
182 K A -1.5592
183 V A 0.0000
184 S A -0.0863
185 I A 0.3141
186 S A -0.4449
187 K A -1.1184
188 N A -1.6082
189 H A -0.9816
190 Y A 1.1416
191 A A 0.1947
192 G A -0.7791
193 D A -2.1961
194 E A -2.3160
195 H A -1.3195
196 T A -0.1879
197 A A -0.0638
198 Y A 0.2493
199 D A -1.1018
200 A A -0.3326
201 D A -0.6843
202 T A -0.2677
203 K A -0.9229
204 A A 0.0000
205 A A 0.0000
206 S A 0.0000
207 N A -0.1302
208 D A 0.0000
209 F A 1.7060
210 M A 0.6062
211 L A 1.1743
212 G A 0.0000
213 I A 1.8012
214 T A 0.0000
215 Y A 0.8001
216 A A 0.4534
217 F A 1.9427
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018