| Chain sequence(s) |
A: DIQMTQSPSSVSASVGDRVEITCRASQGINTWLAWYQQDPGKAPKLLIYAASSLKSGVPERFSGSGSGTDFTLTISSLQPEDFATYYCQQANSFPLTFGGGTKVEIKGGGGSGGGGSGGGGSQVYLVQSIAEFKKPGASVKVSCIFSGYTFTSYGFSWVRQAPGQGLEWGGWISASNGNTYYAQKLQGRVTMTTDTSTSTAYMELRHLRSDDTAVYYCARVYADYADYWGQGTLVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:31)
[INFO] Main: Simulation completed successfully. (00:04:33)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | D | A | -1.7405 | |
| 2 | I | A | -0.2859 | |
| 3 | Q | A | -1.1484 | |
| 4 | M | A | 0.0000 | |
| 5 | T | A | -0.2351 | |
| 6 | Q | A | 0.0000 | |
| 7 | S | A | -0.1491 | |
| 8 | P | A | -0.1797 | |
| 9 | S | A | -0.2706 | |
| 10 | S | A | -0.3904 | |
| 11 | V | A | 0.2662 | |
| 12 | S | A | -0.4959 | |
| 13 | A | A | 0.0000 | |
| 14 | S | A | 0.1640 | |
| 15 | V | A | 1.2552 | |
| 16 | G | A | -0.3706 | |
| 17 | D | A | -1.2138 | |
| 18 | R | A | -1.9993 | |
| 19 | V | A | 0.0000 | |
| 20 | E | A | -1.8216 | |
| 21 | I | A | 0.0000 | |
| 22 | T | A | -0.0257 | |
| 23 | C | A | 0.0000 | |
| 24 | R | A | -1.8026 | |
| 25 | A | A | 0.0000 | |
| 26 | S | A | -0.4213 | |
| 27 | Q | A | -1.3198 | |
| 28 | G | A | -0.7047 | |
| 29 | I | A | 0.0000 | |
| 30 | N | A | -1.2963 | |
| 31 | T | A | -0.1545 | |
| 32 | W | A | 0.5819 | |
| 33 | L | A | 0.0000 | |
| 34 | A | A | 0.0000 | |
| 35 | W | A | 0.0000 | |
| 36 | Y | A | 0.0000 | |
| 37 | Q | A | 0.0000 | |
| 38 | Q | A | 0.0000 | |
| 39 | D | A | -0.8340 | |
| 40 | P | A | -0.4919 | |
| 41 | G | A | -0.8347 | |
| 42 | K | A | -1.7858 | |
| 43 | A | A | -0.2993 | |
| 44 | P | A | 0.0000 | |
| 45 | K | A | -1.2898 | |
| 46 | L | A | 0.0000 | |
| 47 | L | A | 0.0000 | |
| 48 | I | A | 0.0000 | |
| 49 | Y | A | 0.3297 | |
| 50 | A | A | 0.0792 | |
| 51 | A | A | 0.0000 | |
| 52 | S | A | -0.2286 | |
| 53 | S | A | -0.0332 | |
| 54 | L | A | 0.4398 | |
| 55 | K | A | -0.4061 | |
| 56 | S | A | -0.3852 | |
| 57 | G | A | -0.4669 | |
| 58 | V | A | 0.0957 | |
| 59 | P | A | -0.4212 | |
| 60 | E | A | -1.8936 | |
| 61 | R | A | -0.6147 | |
| 62 | F | A | 0.0000 | |
| 63 | S | A | -0.1453 | |
| 64 | G | A | -0.1464 | |
| 65 | S | A | -0.2612 | |
| 66 | G | A | -0.2782 | |
| 67 | S | A | -0.2573 | |
| 68 | G | A | -0.4150 | |
| 69 | T | A | -0.2748 | |
| 70 | D | A | -1.1604 | |
| 71 | F | A | 0.0000 | |
| 72 | T | A | -0.0215 | |
| 73 | L | A | 0.0000 | |
| 74 | T | A | -0.2257 | |
| 75 | I | A | 0.0000 | |
| 76 | S | A | -0.3026 | |
| 77 | S | A | -0.1556 | |
| 78 | L | A | 0.0000 | |
| 79 | Q | A | -0.4337 | |
| 80 | P | A | -0.6615 | |
| 81 | E | A | -1.8669 | |
| 82 | D | A | 0.0000 | |
| 83 | F | A | 0.2709 | |
| 84 | A | A | 0.0000 | |
| 85 | T | A | 0.0000 | |
| 86 | Y | A | 0.0000 | |
| 87 | Y | A | 0.0000 | |
| 88 | C | A | 0.0000 | |
| 89 | Q | A | 0.0000 | |
| 90 | Q | A | 0.0000 | |
| 91 | A | A | -0.1056 | |
| 92 | N | A | -0.6225 | |
| 93 | S | A | -0.1072 | |
| 94 | F | A | 0.8980 | |
| 95 | P | A | 0.2425 | |
| 96 | L | A | 0.0000 | |
| 97 | T | A | 0.0225 | |
| 98 | F | A | 0.1838 | |
| 99 | G | A | 0.0000 | |
| 100 | G | A | -0.4663 | |
| 101 | G | A | 0.0000 | |
| 102 | T | A | 0.0000 | |
| 103 | K | A | -1.5681 | |
| 104 | V | A | 0.0000 | |
| 105 | E | A | -1.2384 | |
| 106 | I | A | 0.6550 | |
| 107 | K | A | -1.5930 | |
| 108 | G | A | -0.8506 | |
| 109 | G | A | -0.6297 | |
| 110 | G | A | -0.6426 | |
| 111 | G | A | -0.5955 | |
| 112 | S | A | -0.3814 | |
| 113 | G | A | -0.5893 | |
| 114 | G | A | -0.6376 | |
| 115 | G | A | -0.6389 | |
| 116 | G | A | -0.5903 | |
| 117 | S | A | -0.3811 | |
| 118 | G | A | -0.6026 | |
| 119 | G | A | -0.6540 | |
| 120 | G | A | -0.6444 | |
| 121 | G | A | -0.5923 | |
| 122 | S | A | -0.5197 | |
| 123 | Q | A | -1.1880 | |
| 124 | V | A | 0.1186 | |
| 125 | Y | A | 0.8502 | |
| 126 | L | A | 0.0000 | |
| 127 | V | A | 0.9195 | |
| 128 | Q | A | 0.0000 | |
| 129 | S | A | 0.3348 | |
| 130 | I | A | 2.0152 | |
| 131 | A | A | 0.4662 | |
| 132 | E | A | -0.1229 | |
| 133 | F | A | 1.7481 | |
| 134 | K | A | -0.4869 | |
| 135 | K | A | -1.8095 | |
| 136 | P | A | -0.4532 | |
| 137 | G | A | -0.6066 | |
| 138 | A | A | -0.0884 | |
| 139 | S | A | -0.2822 | |
| 140 | V | A | 0.0000 | |
| 141 | K | A | -1.6602 | |
| 142 | V | A | 0.0000 | |
| 143 | S | A | -0.0039 | |
| 144 | C | A | 0.0000 | |
| 145 | I | A | 0.7838 | |
| 146 | F | A | 0.0000 | |
| 147 | S | A | -0.1329 | |
| 148 | G | A | -0.3927 | |
| 149 | Y | A | 0.1604 | |
| 150 | T | A | -0.0235 | |
| 151 | F | A | 0.0000 | |
| 152 | T | A | -0.0964 | |
| 153 | S | A | -0.1710 | |
| 154 | Y | A | 0.2165 | |
| 155 | G | A | 0.0000 | |
| 156 | F | A | 0.0000 | |
| 157 | S | A | 0.0000 | |
| 158 | W | A | 0.0000 | |
| 159 | V | A | 0.0000 | |
| 160 | R | A | 0.0000 | |
| 161 | Q | A | -0.1483 | |
| 162 | A | A | 0.0000 | |
| 163 | P | A | -0.3432 | |
| 164 | G | A | -0.7442 | |
| 165 | Q | A | -1.3105 | |
| 166 | G | A | -0.3421 | |
| 167 | L | A | 0.0000 | |
| 168 | E | A | -0.5052 | |
| 169 | W | A | 0.0000 | |
| 170 | G | A | 0.0000 | |
| 171 | G | A | 0.0000 | |
| 172 | W | A | 0.1540 | |
| 173 | I | A | 0.0000 | |
| 174 | S | A | 0.0000 | |
| 175 | A | A | 0.0000 | |
| 176 | S | A | -0.4605 | |
| 177 | N | A | -1.3745 | |
| 178 | G | A | -0.7548 | |
| 179 | N | A | -1.0888 | |
| 180 | T | A | -0.1063 | |
| 181 | Y | A | 0.6822 | |
| 182 | Y | A | 0.3817 | |
| 183 | A | A | 0.0000 | |
| 184 | Q | A | -1.6495 | |
| 185 | K | A | -1.9251 | |
| 186 | L | A | 0.0000 | |
| 187 | Q | A | -1.4161 | |
| 188 | G | A | -0.7527 | |
| 189 | R | A | -0.5958 | |
| 190 | V | A | 0.0000 | |
| 191 | T | A | -0.1426 | |
| 192 | M | A | 0.0000 | |
| 193 | T | A | -0.0455 | |
| 194 | T | A | -0.1456 | |
| 195 | D | A | -0.6981 | |
| 196 | T | A | -0.2405 | |
| 197 | S | A | -0.2370 | |
| 198 | T | A | -0.1106 | |
| 199 | S | A | -0.0667 | |
| 200 | T | A | 0.0000 | |
| 201 | A | A | 0.0000 | |
| 202 | Y | A | 0.2312 | |
| 203 | M | A | 0.0000 | |
| 204 | E | A | -1.0321 | |
| 205 | L | A | 0.0000 | |
| 206 | R | A | -1.6729 | |
| 207 | H | A | -1.3249 | |
| 208 | L | A | 0.0000 | |
| 209 | R | A | -1.6676 | |
| 210 | S | A | -0.8511 | |
| 211 | D | A | -1.8287 | |
| 212 | D | A | 0.0000 | |
| 213 | T | A | -0.0166 | |
| 214 | A | A | 0.0000 | |
| 215 | V | A | 0.5662 | |
| 216 | Y | A | 0.0000 | |
| 217 | Y | A | 0.0000 | |
| 218 | C | A | 0.0000 | |
| 219 | A | A | 0.0000 | |
| 220 | R | A | 0.0000 | |
| 221 | V | A | 0.3896 | |
| 222 | Y | A | 1.2216 | |
| 223 | A | A | 0.2416 | |
| 224 | D | A | -0.1654 | |
| 225 | Y | A | 0.0918 | |
| 226 | A | A | 0.0000 | |
| 227 | D | A | -0.1292 | |
| 228 | Y | A | 0.4316 | |
| 229 | W | A | 0.2081 | |
| 230 | G | A | 0.0000 | |
| 231 | Q | A | -1.2108 | |
| 232 | G | A | -0.2878 | |
| 233 | T | A | 0.0000 | |
| 234 | L | A | 1.0158 | |
| 235 | V | A | 0.0000 | |
| 236 | T | A | 0.2012 | |
| 237 | V | A | 0.0000 | |
| 238 | S | A | -0.1322 | |
| 239 | S | A | -0.2293 |