Project name: query_structure

Status: done

Started: 2026-03-17 01:16:12
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Chain sequence(s) A: VSDVPRDLEVVAATPTSLLISWDGDGHEEIRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVRDEETGEFHWPPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:45)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:46)
Show buried residues

Minimal score value
-3.8481
Maximal score value
1.5197
Average score
-1.1445
Total score value
-108.7258

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.3258
2 S A -0.2810
3 D A -1.8479
4 V A -1.4689
5 P A 0.0000
6 R A -3.3740
7 D A -3.2882
8 L A 0.0000
9 E A -2.1266
10 V A 0.0776
11 V A 1.5197
12 A A 0.8773
13 A A 0.2916
14 T A -0.5351
15 P A -1.1315
16 T A -1.0060
17 S A -0.5471
18 L A 0.0000
19 L A 0.7050
20 I A 0.0000
21 S A -1.1319
22 W A 0.0000
23 D A -3.7613
24 G A -3.0363
25 D A -3.5193
26 G A -2.8499
27 H A -3.1520
28 E A -3.4928
29 E A -3.4737
30 I A 0.0000
31 R A -3.2310
32 Y A -1.7506
33 Y A 0.0000
34 R A -0.7582
35 I A 0.0000
36 T A -0.6771
37 Y A -0.3802
38 G A 0.0000
39 E A -1.5516
40 T A -1.2268
41 G A -1.2195
42 G A -1.3325
43 N A -1.5180
44 S A -0.8783
45 P A -0.4047
46 V A 0.2662
47 Q A -1.1854
48 E A -1.8141
49 F A -0.7570
50 T A -0.3548
51 V A 0.0000
52 P A -1.2003
53 G A -2.3050
54 S A -1.7496
55 K A -1.9518
56 S A -1.6775
57 T A -0.7483
58 A A 0.0000
59 T A 0.2277
60 I A 0.0000
61 S A -0.6639
62 G A -1.0321
63 L A 0.0000
64 K A -2.3748
65 P A -1.6678
66 G A -1.4544
67 V A -1.4485
68 D A -2.0933
69 Y A 0.0000
70 T A -0.7685
71 I A 0.0000
72 T A -0.1811
73 V A 0.0000
74 Y A -0.1409
75 A A 0.0000
76 V A 0.0000
77 R A -3.0934
78 D A -3.7458
79 E A -3.8481
80 E A -3.5270
81 T A -2.3763
82 G A -2.5806
83 E A -2.4955
84 F A -0.8362
85 H A -1.1743
86 W A -0.6368
87 P A -0.4305
88 P A -0.2833
89 I A -0.1618
90 S A -0.3522
91 I A -0.7016
92 N A -1.7195
93 Y A -1.4656
94 R A -2.5435
95 T A -1.5236
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Laboratory of Theory of Biopolymers 2018