Project name: 6834ff071738399

Status: done

Started: 2024-12-18 15:45:59
Settings
Chain sequence(s) H: VQLVESGGGLIQPGGSLRLSCAASGITVSSNYMSWVRQAPGKGLEWVSVMYAGGSTFYADSVKGRFTISRDDSKNTLFLQMNSLRAEDTAIYYCARDLYSSGGTDIWGQGTMVTVSSASTKGPSVFPLAPSSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK
L: EIVLTQSPGTLSLSPGERATLSCRASQSIGSSYLAWYQQKPGLAPRLLIYGASRRATGIPDKFSGSGSGADFTLTISRLEPEDFAVYYCQQYGSSPGTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:59)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:01)
Show buried residues

Minimal score value
-3.812
Maximal score value
1.5519
Average score
-0.7324
Total score value
-309.0522

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
2 V H 1.0768
3 Q H -0.1962
4 L H 0.0000
5 V H 0.6634
6 E H 0.0000
7 S H -0.4419
8 G H -0.8031
9 G H -0.3071
11 G H -0.1512
12 L H -0.0483
13 I H -0.4513
14 Q H -1.5053
15 P H -1.8159
16 G H -1.4830
17 G H -1.0982
18 S H -1.2789
19 L H -1.0767
20 R H -2.0150
21 L H 0.0000
22 S H -0.3772
23 C H 0.0000
24 A H -0.1972
25 A H -0.1390
26 S H 0.0377
27 G H 0.0147
28 I H 0.0806
29 T H -0.7555
30 V H 0.0000
35 S H -0.8507
36 S H -0.4524
37 N H -0.0290
38 Y H 0.2979
39 M H 0.0000
40 S H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6463
45 A H -1.0965
46 P H -1.1743
47 G H -1.6110
48 K H -2.4259
49 G H -1.5693
50 L H 0.0000
51 E H -1.0713
52 W H 0.0000
53 V H 0.0000
54 S H 0.0000
55 V H 0.0000
56 M H 0.0000
57 Y H 0.2440
58 A H -0.1634
59 G H -0.5032
63 G H -0.3788
64 S H -0.1144
65 T H 0.2805
66 F H 0.3360
67 Y H -0.5949
68 A H -1.2642
69 D H -2.4057
70 S H -1.8099
71 V H 0.0000
72 K H -2.5129
74 G H -1.7990
75 R H -1.5420
76 F H 0.0000
77 T H -0.7179
78 I H 0.0000
79 S H -0.5508
80 R H -1.3519
81 D H -2.0759
82 D H -2.8825
83 S H -2.1619
84 K H -2.6823
85 N H -2.0969
86 T H 0.0000
87 L H 0.0000
88 F H -0.4372
89 L H 0.0000
90 Q H -1.1324
91 M H 0.0000
92 N H -1.5806
93 S H -1.3426
94 L H 0.0000
95 R H -2.6948
96 A H -1.8870
97 E H -2.4121
98 D H 0.0000
99 T H -0.6794
100 A H 0.0000
101 I H 0.5688
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.1746
107 D H 0.0000
108 L H 0.2385
109 Y H 0.0000
110 S H -0.0883
112 S H -0.0974
113 G H 0.0000
114 G H 0.0000
115 T H 0.0000
116 D H -0.5694
117 I H -0.1179
118 W H -0.2141
119 G H 0.0000
120 Q H -0.6785
121 G H -0.0119
122 T H 0.0505
123 M H 0.3666
124 V H 0.0000
125 T H 0.0000
126 V H 0.0000
127 S H -0.9266
129 A H -0.3052
130 S H -0.5654
131 T H -0.6507
132 K H -1.3111
133 G H -1.6273
134 P H -0.8553
135 S H -0.4432
136 V H 0.0000
137 F H -0.7937
138 P H -1.1904
139 L H 0.0000
140 A H 0.0000
141 P H -0.7890
142 S H -1.1605
143 S H -0.7235
144 G H -0.7830
145 G H -0.8866
146 T H -0.5959
147 A H 0.0000
148 A H 0.0000
149 L H 0.0000
150 G H 0.0000
151 C H 0.0000
152 L H 0.0000
153 V H 0.0000
154 K H -0.4140
155 D H -0.6697
156 Y H 0.0000
157 F H -0.3809
158 P H 0.0000
159 E H -0.3851
160 P H -0.6783
161 V H -0.7217
162 T H -0.6718
163 V H -0.3080
164 S H -0.3506
165 W H 0.0000
166 N H -0.8350
167 S H -0.6110
168 G H -0.5131
169 A H -0.2781
170 L H -0.0718
171 T H -0.2024
172 S H -0.2085
173 G H -0.2612
174 V H 0.1436
175 H H -0.3196
176 T H 0.0435
177 F H 0.0000
178 P H -0.2534
179 A H 0.3085
180 V H 0.7909
181 L H 1.5519
182 Q H 0.3832
183 S H -0.0277
184 S H -0.2438
185 G H 0.0549
186 L H 0.0216
187 Y H 0.4518
188 S H 0.0000
189 L H 0.1286
190 S H 0.0000
191 S H 0.0000
192 V H 0.0000
193 V H 0.0000
194 T H -0.1488
195 V H 0.0000
196 P H -0.5649
197 S H -0.6179
198 S H -0.5217
199 S H -0.6330
200 L H -0.8145
201 G H -1.0430
202 T H -0.8572
203 Q H -1.5217
204 T H -1.4391
205 Y H 0.0000
206 I H -1.3288
207 C H 0.0000
208 N H 0.0000
209 V H 0.0000
210 N H -2.1990
211 H H 0.0000
212 K H -2.7968
213 P H -1.6173
214 S H -1.8703
215 N H -2.5629
216 T H -2.2310
217 K H -2.6714
218 V H -1.5606
219 D H -2.1562
220 K H -2.1393
221 R H -2.7980
222 V H 0.0000
223 E H -3.0338
224 P H -2.1576
225 K H -2.3270
1 E L -1.4648
2 I L -0.1857
3 V L 0.7361
4 L L 0.0000
5 T L -0.8430
6 Q L 0.0000
8 P L -0.6711
9 G L -1.0116
10 T L -0.7931
12 S L -0.7060
13 L L -1.2210
14 S L -1.8446
15 P L -2.5664
16 G L -2.5744
17 E L -3.2548
18 R L -3.1544
19 A L 0.0000
20 T L -0.7524
21 L L 0.0000
22 S L -1.1072
23 C L 0.0000
24 R L -2.6132
25 A L 0.0000
26 S L -1.0425
27 Q L -1.6795
29 I L -0.7101
30 G L -0.7273
37 S L -0.4428
38 Y L 0.1786
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -0.5309
46 P L -0.4083
47 G L 0.0794
48 L L 0.7526
49 A L 0.1327
50 P L 0.0000
51 R L -0.7156
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.7987
56 G L -0.8840
57 A L 0.0000
65 S L -1.5031
66 R L -2.3464
67 R L -2.0446
68 A L -1.1201
69 T L -0.7145
70 G L -0.7596
71 I L -1.0616
72 P L -1.2796
74 D L -2.1722
75 K L -1.8983
76 F L 0.0000
77 S L -1.1654
78 G L -1.0274
79 S L -1.0167
80 G L -1.3993
83 S L -1.3168
84 G L -1.4240
85 A L -2.0615
86 D L -2.9749
87 F L 0.0000
88 T L -0.9453
89 L L 0.0000
90 T L -0.9978
91 I L 0.0000
92 S L -2.7910
93 R L -3.4716
94 L L 0.0000
95 E L -3.6171
96 P L -2.9470
97 E L -3.2401
98 D L 0.0000
99 F L 0.0000
100 A L 0.0000
101 V L -0.4679
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0000
108 G L -0.2775
109 S L -0.3370
114 S L 0.0950
115 P L 0.1007
116 G L 0.0000
117 T L -0.0623
118 F L 0.0549
119 G L 0.0000
120 Q L -1.5675
121 G L 0.0000
122 T L 0.0000
123 K L -1.1768
124 V L 0.0000
125 E L -1.4979
126 I L 0.0000
127 K L -1.4534
128 R L -1.1163
129 T L -0.1961
130 V L 0.1364
131 A L -0.1885
132 A L -0.2008
133 P L 0.0000
134 S L -0.2357
135 V L 0.0000
136 F L -0.0573
137 I L 0.0000
138 F L 0.0000
139 P L 0.0000
140 P L 0.0000
141 S L 0.0000
142 D L -3.1317
143 E L -3.1934
144 Q L 0.0000
145 L L -2.3451
146 K L -2.9452
147 S L -1.8516
148 G L -1.4134
149 T L -1.1934
150 A L 0.0000
151 S L 0.0000
152 V L 0.0000
153 V L 0.0000
154 C L 0.0000
155 L L 0.0000
156 L L 0.0000
157 N L 0.0000
158 N L -0.9635
159 F L 0.0000
160 Y L 0.0000
161 P L -1.7005
162 R L -3.0590
163 E L -3.2238
164 A L -2.3418
165 K L -2.4159
166 V L -1.1287
167 Q L -0.5912
168 W L 0.0000
169 K L -0.6789
170 V L 0.0000
171 D L -2.0023
172 N L -1.5933
173 A L -0.2826
174 L L 0.7112
175 Q L -0.2830
176 S L -0.6260
177 G L -1.1909
178 N L -1.4233
179 S L -1.4258
180 Q L -1.5582
181 E L -1.8922
182 S L -0.8053
183 V L -0.9118
184 T L -1.1563
185 E L -2.1606
186 Q L 0.0000
187 D L -2.0917
188 S L -2.6913
189 K L -3.0469
190 D L -2.4608
191 S L 0.0000
192 T L 0.0000
193 Y L -1.3283
194 S L 0.0000
195 L L 0.0000
196 S L 0.0000
197 S L 0.0000
198 T L -0.7561
199 L L 0.0000
200 T L -0.5938
201 L L -0.8055
202 S L -1.0567
203 K L -2.0579
204 A L -1.9304
205 D L -2.6459
206 Y L 0.0000
207 E L -3.8089
208 K L -3.8120
209 H L -3.4674
210 K L -3.4970
211 V L -1.8906
212 Y L 0.0000
213 A L 0.0000
214 C L 0.0000
215 E L -0.9087
216 V L 0.0000
217 T L -1.2112
218 H L 0.0000
219 Q L -1.7959
220 G L -0.4855
221 L L -0.2692
222 S L -0.4425
223 S L -0.4279
224 P L -0.5541
225 V L -0.1177
226 T L -0.5930
227 K L -0.9190
228 S L -0.9756
229 F L 0.0000
230 N L -2.3376
231 R L -2.6527
232 G L -1.7902
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Laboratory of Theory of Biopolymers 2018