Project name: query_structure

Status: done

Started: 2026-03-16 23:34:48
Settings
Chain sequence(s) A: GSSVPTNLEVVAATPTSLLISWDASYYYVSYYRITYGETGGNSPVQEFTVPSYYSTATISGLKPGVDYTITVYAYYYYSYYYYYYSPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:27)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:28)
Show buried residues

Minimal score value
-2.4584
Maximal score value
3.619
Average score
0.1277
Total score value
12.004

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.1121
2 S A -0.0004
3 S A 0.9684
4 V A 0.6631
5 P A 0.0000
6 T A -1.2647
7 N A -2.0438
8 L A 0.0000
9 E A -1.6762
10 V A 0.1690
11 V A 1.5543
12 A A 0.9178
13 A A 0.3391
14 T A -0.1523
15 P A -1.1025
16 T A -0.9935
17 S A -0.5024
18 L A 0.0000
19 L A 0.8066
20 I A 0.0000
21 S A -0.4680
22 W A 0.0000
23 D A -1.6078
24 A A 0.1646
25 S A 0.6964
26 Y A 1.5931
27 Y A 1.8665
28 Y A 2.2285
29 V A 2.0988
30 S A 1.1606
31 Y A 0.8765
32 Y A 0.0000
33 R A -0.4846
34 I A 0.0000
35 T A -0.4422
36 Y A -0.1540
37 G A 0.0000
38 E A -1.5549
39 T A -1.2567
40 G A -1.3171
41 G A -1.2354
42 N A -1.6686
43 S A -0.7871
44 P A -0.1925
45 V A 0.6007
46 Q A -0.6256
47 E A -1.4114
48 F A -0.5171
49 T A -0.2106
50 V A 0.5656
51 P A 0.6754
52 S A 1.1808
53 Y A 1.8358
54 Y A 1.5530
55 S A 0.4409
56 T A 0.3742
57 A A 0.0000
58 T A 0.0885
59 I A 0.0000
60 S A -0.6459
61 G A -1.0247
62 L A 0.0000
63 K A -2.3495
64 P A -1.6726
65 G A -1.4515
66 V A -1.4101
67 D A -1.9208
68 Y A -1.1641
69 T A -0.6705
70 I A 0.0000
71 T A 0.0000
72 V A 0.0000
73 Y A 0.7186
74 A A 0.0000
75 Y A 2.1061
76 Y A 0.0000
77 Y A 2.9817
78 Y A 2.4770
79 S A 1.4286
80 Y A 2.3482
81 Y A 3.1949
82 Y A 3.6049
83 Y A 3.6190
84 Y A 3.4411
85 Y A 2.5610
86 S A 1.2704
87 P A 0.5948
88 I A 0.1833
89 S A -0.4069
90 I A -0.5457
91 N A -1.6068
92 Y A -1.3639
93 R A -2.4584
94 T A -1.4709
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018