Project name: RFC28

Status: done

Started: 2025-07-15 15:46:06
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Chain sequence(s) A: TATATLTITDASGTVKTATATAGNGEKAVVTGTGTGSNNKATTTASATSPANALSASFEVRPTIKFTPGADVDIDATPLTVASALGASGNPVSAGTATQNITSSGTLNVTNELVQHLTLS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:04)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:05)
Show buried residues

Minimal score value
-3.251
Maximal score value
1.241
Average score
-0.4646
Total score value
-55.7501

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 T A -0.9232
2 A A 0.0000
3 T A -0.2664
4 A A 0.0000
5 T A 0.0076
6 L A 0.0000
7 T A -0.3955
8 I A 0.0000
9 T A -0.5501
10 D A -0.9180
11 A A -0.8803
12 S A -0.5053
13 G A -0.6577
14 T A 0.1433
15 V A 0.7824
16 K A -0.4589
17 T A -0.2389
18 A A -0.2507
19 T A 0.0340
20 A A -0.0709
21 T A -0.5259
22 A A 0.0000
23 G A -1.7479
24 N A -2.1852
25 G A -2.4602
26 E A -3.2510
27 K A -3.0275
28 A A 0.0000
29 V A -0.1391
30 V A 0.0000
31 T A 0.0162
32 G A -0.3616
33 T A -0.5632
34 G A 0.0000
35 T A -0.5865
36 G A -0.7677
37 S A -1.3745
38 N A -2.0705
39 N A 0.0000
40 K A -1.7879
41 A A 0.0000
42 T A -0.8426
43 T A 0.0000
44 T A -0.1826
45 A A 0.0000
46 S A -0.0151
47 A A 0.0000
48 T A 0.1262
49 S A 0.0000
50 P A -0.0257
51 A A -0.0936
52 N A -0.5624
53 A A 0.0000
54 L A 1.2410
55 S A 0.3418
56 A A 0.0090
57 S A -0.6223
58 F A 0.0000
59 E A -1.7077
60 V A -1.2954
61 R A -2.1154
62 P A -1.0936
63 T A -0.7886
64 I A -0.6055
65 K A -1.4264
66 F A -0.6725
67 T A -0.7558
68 P A -0.8406
69 G A -0.8891
70 A A -1.2918
71 D A -2.1410
72 V A -1.1138
73 D A -1.9928
74 I A -0.9352
75 D A -1.9888
76 A A -1.1443
77 T A -0.6087
78 P A -0.0888
79 L A 0.5351
80 T A 0.5675
81 V A 0.9268
82 A A 0.5579
83 S A 0.5144
84 A A 0.7269
85 L A 1.0919
86 G A 0.1066
87 A A -0.1126
88 S A -0.4425
89 G A -0.5322
90 N A -0.4663
91 P A 0.3506
92 V A 0.6155
93 S A 0.0000
94 A A 0.3407
95 G A 0.0000
96 T A 0.2861
97 A A 0.0000
98 T A -0.5548
99 Q A -0.9168
100 N A -1.9177
101 I A 0.0000
102 T A -1.7912
103 S A 0.0000
104 S A -1.5464
105 G A -0.8077
106 T A -0.6577
107 L A 0.0000
108 N A -0.7479
109 V A 0.0000
110 T A -0.4517
111 N A 0.0000
112 E A -1.0721
113 L A 0.0000
114 V A 0.0000
115 Q A 0.0000
116 H A -1.6778
117 L A -0.2788
118 T A 0.3792
119 L A 0.9386
120 S A 0.3895
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Laboratory of Theory of Biopolymers 2018