Project name: query_structure

Status: done

Started: 2026-03-17 00:35:51
Settings
Chain sequence(s) A: QVQLVESGGALVQPGGSLRLSCAASGLEVQWSDLRWYRQAPGKEREWVCGISWTPFFISYEDSVKGRFTCSRDDARNTVYLQLNSLKPEDTAVYYCASQHSHAMAMHTKTLYWGQGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:58)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:59)
Show buried residues

Minimal score value
-3.6413
Maximal score value
3.5493
Average score
-0.6843
Total score value
-84.1638

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.5577
2 V A -1.3167
3 Q A -1.0752
4 L A 0.0000
5 V A 1.2081
6 E A 0.0000
7 S A -0.5276
8 G A -1.1637
9 G A -0.6994
10 A A 0.1527
11 L A 1.1481
12 V A 0.0306
13 Q A -1.3417
14 P A -1.5864
15 G A -1.3750
16 G A -0.9144
17 S A -1.2758
18 L A -1.0249
19 R A -2.2515
20 L A 0.0000
21 S A -0.4119
22 C A 0.0000
23 A A -0.0788
24 A A 0.0000
25 S A -1.1177
26 G A -1.5185
27 L A 0.0000
28 E A -2.7683
29 V A 0.0000
30 Q A -2.0320
31 W A -0.9075
32 S A 0.0000
33 D A -0.2694
34 L A 0.0000
35 R A -0.3275
36 W A 0.0000
37 Y A -0.8087
38 R A -1.4845
39 Q A -2.1850
40 A A -2.0999
41 P A -1.3913
42 G A -1.9318
43 K A -3.4275
44 E A -3.6413
45 R A -2.8723
46 E A -2.6508
47 W A -1.0864
48 V A 0.0000
49 C A 0.0000
50 G A 0.0000
51 I A 0.0000
52 S A 1.2196
53 W A 0.8529
54 T A 1.3014
55 P A 1.4352
56 F A 3.1806
57 F A 3.5493
58 I A 2.7601
59 S A 0.7256
60 Y A -0.8665
61 E A -2.0769
62 D A -2.7794
63 S A -1.8376
64 V A 0.0000
65 K A -2.7930
66 G A -1.8065
67 R A -1.3559
68 F A 0.0000
69 T A -0.7927
70 C A 0.0000
71 S A -0.5148
72 R A -1.6952
73 D A -2.6403
74 D A -3.5099
75 A A -2.4375
76 R A -3.0296
77 N A -2.8033
78 T A 0.0000
79 V A 0.0000
80 Y A -0.8159
81 L A 0.0000
82 Q A -1.5459
83 L A 0.0000
84 N A -1.3720
85 S A -1.1840
86 L A 0.0000
87 K A -2.2783
88 P A -1.9655
89 E A -2.3364
90 D A 0.0000
91 T A -0.9097
92 A A 0.0000
93 V A -0.4588
94 Y A 0.0000
95 Y A -0.3284
96 C A 0.0000
97 A A 0.0000
98 S A 0.0000
99 Q A -0.7325
100 H A -1.3719
101 S A -0.6488
102 H A -0.1316
103 A A 0.4273
104 M A 1.0363
105 A A 0.2352
106 M A 0.5612
107 H A -0.7644
108 T A -1.2253
109 K A -1.8082
110 T A -0.7491
111 L A 0.1439
112 Y A 0.2408
113 W A 0.4889
114 G A 0.0785
115 Q A -0.7903
116 G A -0.4423
117 T A -0.6515
118 Q A -0.9592
119 V A 0.0000
120 T A -0.2097
121 V A 0.0000
122 S A -0.6914
123 S A -0.5088
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Laboratory of Theory of Biopolymers 2018