Project name: 689a90b0ae9491d

Status: done

Started: 2025-06-03 05:19:31
Settings
Chain sequence(s) H: EVQLVQSGAEVKKPGASVKVSCKASGYTFTRNFMHWVRQAPGQGLEWMGWIYPGDGETEYAQKFQGRVTITADTSTSTAYMELSSLRSEDTAVYYCARGVYGGFAGGYFDFWGQGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCKASQNIYKNLAWYQQKPGKAPKLLIYDANTLQTGVPSRFSGSGSGSDFTLTISSLQPEDFATYFCQQYYSGWAFGQGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:29)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:31)
Show buried residues

Minimal score value
-2.8427
Maximal score value
1.7404
Average score
-0.6154
Total score value
-140.3193

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.1234
2 V H -1.0610
3 Q H -1.3395
4 L H 0.0000
5 V H 0.7288
6 Q H 0.0000
7 S H -0.3453
8 G H -0.3722
9 A H 0.3329
11 E H 0.1625
12 V H 1.0265
13 K H -0.9212
14 K H -2.1299
15 P H -2.1253
16 G H -1.4968
17 A H -1.1725
18 S H -1.2362
19 V H 0.0000
20 K H -1.6559
21 V H 0.0000
22 S H -0.4049
23 C H 0.0000
24 K H -0.7603
25 A H 0.0000
26 S H -0.9053
27 G H -1.2166
28 Y H -0.7430
29 T H -0.6577
30 F H 0.0000
35 T H -1.4134
36 R H -1.8176
37 N H 0.0000
38 F H 0.0000
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.4587
45 A H -0.8591
46 P H -0.7026
47 G H -1.2110
48 Q H -1.8128
49 G H -1.2816
50 L H 0.0000
51 E H -0.9120
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 W H 0.0000
56 I H 0.0000
57 Y H -1.3913
58 P H 0.0000
59 G H -2.1247
62 D H -2.6268
63 G H -2.1852
64 E H -2.6487
65 T H -1.4697
66 E H -1.3613
67 Y H -1.1959
68 A H -1.7635
69 Q H -2.8427
70 K H -2.7310
71 F H 0.0000
72 Q H -2.5104
74 G H -1.6659
75 R H -1.5226
76 V H 0.0000
77 T H -0.8108
78 I H 0.0000
79 T H -0.3877
80 A H -0.7944
81 D H -0.7050
82 T H -0.7192
83 S H -0.4120
84 T H -0.5308
85 S H -0.6026
86 T H 0.0000
87 A H 0.0000
88 Y H -0.4485
89 M H 0.0000
90 E H -1.1929
91 L H 0.0000
92 S H -1.0459
93 S H -1.1381
94 L H 0.0000
95 R H -2.7041
96 S H -2.1845
97 E H -2.4241
98 D H 0.0000
99 T H -0.6055
100 A H 0.0000
101 V H 0.7268
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0450
107 G H 0.0000
108 V H 0.5347
109 Y H 0.4626
110 G H 0.0788
111 G H 0.4315
111A F H 1.7404
112A A H 0.0000
112 G H 0.4591
113 G H 0.0000
114 Y H 0.0000
115 F H 0.0000
116 D H 0.0090
117 F H 0.2214
118 W H -0.2070
119 G H 0.0000
120 Q H -1.1512
121 G H -0.3749
122 T H 0.0000
123 L H 1.0324
124 V H 0.0000
125 T H -0.0229
126 V H 0.0000
127 S H -1.2215
128 S H -1.0328
1 D L -2.4230
2 I L 0.0000
3 Q L -2.0932
4 M L 0.0000
5 T L -1.1386
6 Q L 0.0000
7 S L -0.5187
8 P L -0.5456
9 S L -0.9106
10 S L -1.2562
11 L L -0.8486
12 S L -0.9435
13 A L 0.0000
14 S L -0.0909
15 V L 0.8699
16 G L -0.4068
17 D L -1.1609
18 R L -2.0484
19 V L 0.0000
20 T L -0.5563
21 I L 0.0000
22 T L -0.6862
23 C L 0.0000
24 K L -2.0423
25 A L -1.7432
26 S L -1.7765
27 Q L -1.7695
28 N L -1.1898
29 I L 0.0000
36 Y L 0.1386
37 K L -1.2337
38 N L -0.5861
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L -1.0057
44 Q L -1.4179
45 K L -1.8627
46 P L -1.3016
47 G L -1.7103
48 K L -2.6057
49 A L -1.5289
50 P L 0.0000
51 K L -1.3830
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.4659
56 D L -1.1602
57 A L 0.0000
65 N L -1.2922
66 T L -0.4164
67 L L 0.0183
68 Q L -0.3670
69 T L -0.3043
70 G L -0.5181
71 V L 0.0000
72 P L -0.3972
74 S L -0.4255
75 R L -0.6941
76 F L 0.0000
77 S L -0.4574
78 G L 0.0000
79 S L -1.1258
80 G L -1.3079
83 S L -1.2550
84 G L -0.9847
85 S L -1.6915
86 D L -2.4676
87 F L 0.0000
88 T L -0.8056
89 L L 0.0000
90 T L -0.5521
91 I L 0.0000
92 S L -1.1569
93 S L -0.9836
94 L L 0.0000
95 Q L -0.6479
96 P L -0.5271
97 E L -1.7135
98 D L 0.0000
99 F L -0.7318
100 A L 0.0000
101 T L -1.2946
102 Y L 0.0000
103 F L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0000
108 Y L 0.3740
114 S L -0.3082
115 G L -0.6169
116 W L 0.0000
117 A L -0.6803
118 F L 0.0000
119 G L 0.0000
120 Q L -1.5457
121 G L 0.0000
122 T L 0.0000
123 K L -2.0359
124 V L 0.0000
125 E L -1.5853
126 I L 0.4264
127 K L -0.9464
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Laboratory of Theory of Biopolymers 2018