Project name: seed2

Status: done

Started: 2026-03-03 09:04:41
Settings
Chain sequence(s) A: NASCEYSASHKQDLLLGSTGSISCPSLSCQSDAQSPAVTWYKNGKLLSVERSNRIVVDEVYDYHQGTYVCDYTQSDTVSSWTVRAVVQVRTIVGDTKDKTHTCPPCPAPEAAGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALGAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
B: NASCEYSASHKQDLLLGSTGSISCPSLSCQSDAQSPAVTWYKNGKLLSVERSNRIVVDEVYDYHQGTYVCDYTQSDTVSSWTVRAVVQVRTIVGDTKDKTHTCPPCPAPEAAGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALGAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:13:58)
[INFO]       Main:     Simulation completed successfully.                                          (00:14:07)
Show buried residues

Minimal score value
-4.0084
Maximal score value
1.9722
Average score
-0.6714
Total score value
-435.0993

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -1.5284
2 A A -0.8664
3 S A -0.6178
4 C A -0.6850
5 E A -1.3487
6 Y A 0.3650
7 S A -0.0920
8 A A -0.2556
9 S A -0.4186
10 H A -0.6161
11 K A 0.0000
12 Q A -0.4878
13 D A -0.1016
14 L A 0.0000
15 L A 1.2366
16 L A 1.2593
17 G A 0.2077
18 S A 0.0781
19 T A -0.1746
20 G A 0.1085
21 S A 0.0792
22 I A 0.0000
23 S A -0.3403
24 C A 0.0000
25 P A 0.0000
26 S A -0.4709
27 L A 0.0000
28 S A -0.5574
29 C A -0.4917
30 Q A -1.2361
31 S A -1.2510
32 D A -1.6016
33 A A -1.3496
34 Q A -1.7903
35 S A 0.0000
36 P A -0.9163
37 A A -0.6239
38 V A 0.0000
39 T A 0.0000
40 W A 0.0000
41 Y A 0.0000
42 K A -0.7559
43 N A -0.8442
44 G A 0.0000
45 K A -1.1028
46 L A -0.2713
47 L A 0.2899
48 S A 0.2659
49 V A 0.2544
50 E A 0.0000
51 R A -1.1239
52 S A -0.8785
53 N A 0.0000
54 R A -0.5550
55 I A 0.3310
56 V A 0.5782
57 V A 0.0000
58 D A -0.4725
59 E A 0.0000
60 V A 0.0000
61 Y A -0.1148
62 D A -0.2778
63 Y A -0.7003
64 H A -0.8254
65 Q A -1.2840
66 G A -0.7923
67 T A 0.0000
68 Y A 0.0000
69 V A 0.0000
70 C A 0.0000
71 D A 0.0000
72 Y A 0.0000
73 T A -0.1172
74 Q A -0.7621
75 S A -0.9188
76 D A -1.3734
77 T A -0.1339
78 V A 1.0817
79 S A 0.0569
80 S A -0.2567
81 W A 0.0545
82 T A 0.1507
83 V A 0.3002
84 R A 0.0000
85 A A 0.0000
86 V A 0.0000
87 V A 0.0000
88 Q A 0.0000
89 V A 0.0000
90 R A -0.7842
91 T A 0.2377
92 I A 1.2193
93 V A 1.8138
94 G A 0.0067
95 D A -2.3319
96 T A -2.4334
97 K A -3.8426
98 D A -3.9906
99 K A -3.5671
100 T A -2.0696
101 H A -1.8304
102 T A -0.9324
103 C A 0.1339
104 P A -0.0181
105 P A -0.0760
106 C A 0.5182
107 P A -0.4694
108 A A -0.5591
109 P A -1.0908
110 E A -2.0918
111 A A -1.1791
112 A A -0.9954
113 G A -1.2116
114 G A -0.9226
115 P A 0.0000
116 S A -0.2701
117 V A 0.0000
118 F A -0.1151
119 L A 0.0000
120 F A 0.0000
121 P A -0.3118
122 P A 0.0000
123 K A 0.0000
124 P A 0.0000
125 K A -0.1049
126 D A 0.0000
127 T A 0.0000
128 L A 0.0000
129 M A 0.8069
130 I A 1.9083
131 S A 0.7551
132 R A 0.4478
133 T A 0.4501
134 P A 0.0000
135 E A -0.1023
136 V A 0.0000
137 T A 0.0000
138 C A 0.0000
139 V A 0.0000
140 V A 0.0000
141 V A 0.0000
142 D A -1.1010
143 V A 0.0000
144 S A -1.8622
145 H A -2.2450
146 E A -2.7998
147 D A -2.5035
148 P A -2.6413
149 E A -3.0278
150 V A -1.9135
151 K A -2.2387
152 F A -1.1991
153 N A -1.1793
154 W A 0.0000
155 Y A -0.6165
156 V A -0.8265
157 D A -2.0172
158 G A -0.8373
159 V A 0.5985
160 E A -0.6958
161 V A -0.5604
162 H A -1.8715
163 N A -2.1502
164 A A -1.7113
165 K A -2.2146
166 T A -1.6895
167 K A -1.6339
168 P A -1.6145
169 R A -2.1751
170 E A -1.9217
171 E A -2.2497
172 Q A 0.0000
173 Y A 0.3452
174 N A -0.3950
175 S A -0.6721
176 T A -1.2043
177 Y A -1.5198
178 R A 0.0000
179 V A 0.0000
180 V A 0.0000
181 S A 0.0000
182 V A 0.0000
183 L A 0.0000
184 T A -0.3665
185 V A 0.0000
186 L A 0.6770
187 H A 0.0000
188 Q A -1.1766
189 D A -1.4517
190 W A 0.0000
191 L A -0.9788
192 N A -2.0488
193 G A -2.0648
194 K A -2.1630
195 E A -2.0465
196 Y A 0.0000
197 K A -1.5758
198 C A 0.0000
199 K A -1.5014
200 V A 0.0000
201 S A -1.5093
202 N A 0.0000
203 K A -2.6367
204 A A -1.5652
205 L A -0.8061
206 G A -0.9637
207 A A -0.4967
208 P A -0.9453
209 I A -0.6590
210 E A -1.9230
211 K A -1.2932
212 T A -1.1339
213 I A 0.0000
214 S A 0.0000
215 K A -1.1954
216 A A -1.1343
217 K A -2.0918
218 G A -1.8895
219 Q A -2.0909
220 P A -1.7740
221 R A -2.0768
222 E A -2.5947
223 P A 0.0000
224 Q A -1.1662
225 V A 0.0000
226 Y A 0.0000
227 T A -0.7858
228 L A 0.0000
229 P A -0.3891
230 P A -0.8593
231 S A 0.0000
232 R A -2.6693
233 D A -2.8169
234 E A 0.0000
235 L A -1.8316
236 T A -1.5658
237 K A -2.1403
238 N A -2.4228
239 Q A -2.1762
240 V A 0.0000
241 S A 0.0000
242 L A 0.0000
243 T A 0.0000
244 C A 0.0000
245 L A 0.0000
246 V A 0.0000
247 K A -0.6319
248 G A -1.1435
249 F A 0.0000
250 Y A 0.0000
251 P A 0.0000
252 S A -0.4036
253 D A -0.7179
254 I A 0.0000
255 A A 0.0000
256 V A 0.0000
257 E A -0.8601
258 W A 0.0000
259 E A -1.6016
260 S A 0.0000
261 N A -1.8929
262 G A -1.8448
263 Q A -2.1563
264 P A -1.6537
265 E A 0.0000
266 N A -1.5426
267 N A -1.2642
268 Y A 0.0000
269 K A 0.0000
270 T A 0.0000
271 T A 0.0000
272 P A 0.1233
273 P A -0.0285
274 V A 0.0000
275 L A -0.1456
276 D A -0.8141
277 S A -1.3471
278 D A -1.9722
279 G A -0.9788
280 S A 0.0000
281 F A -0.3566
282 F A 0.0000
283 L A 0.0000
284 Y A 0.0000
285 S A 0.0000
286 K A 0.0000
287 L A 0.0000
288 T A -0.7865
289 V A 0.0000
290 D A -2.4178
291 K A -2.4850
292 S A -2.1664
293 R A -1.9988
294 W A 0.0000
295 Q A -2.3456
296 Q A -2.1487
297 G A -1.3006
298 N A -0.9641
299 V A 0.0230
300 F A 0.0000
301 S A 0.0000
302 C A 0.0000
303 S A 0.0000
304 V A 0.0000
305 M A 0.0000
306 H A 0.0000
307 E A -1.0645
308 A A -1.5223
309 L A -1.3786
310 H A -1.7381
311 N A -1.6482
312 H A -1.1167
313 Y A -0.3783
314 T A -0.6673
315 Q A -1.0600
316 K A -1.0397
317 S A -0.5451
318 L A 0.0000
319 S A -0.2304
320 L A -0.3686
321 S A -0.6221
322 P A -1.0961
323 G A -1.4157
324 K A -2.0292
1 N B -1.5268
2 A B -0.8668
3 S B -0.5878
4 C B -0.5809
5 E B -1.2878
6 Y B 0.3931
7 S B -0.0442
8 A B -0.2014
9 S B -0.4283
10 H B -0.6068
11 K B 0.0000
12 Q B -0.6596
13 D B -0.2181
14 L B 0.0000
15 L B 1.1754
16 L B 1.2954
17 G B 0.1901
18 S B 0.0927
19 T B -0.1802
20 G B 0.0711
21 S B -0.0034
22 I B 0.0000
23 S B -0.3583
24 C B 0.0000
25 P B 0.0000
26 S B -0.4006
27 L B 0.0000
28 S B -0.3404
29 C B -0.0886
30 Q B -0.8194
31 S B -0.9471
32 D B -1.3233
33 A B -1.2297
34 Q B -1.6275
35 S B 0.0000
36 P B -0.8422
37 A B -0.5571
38 V B 0.0000
39 T B 0.0000
40 W B 0.0000
41 Y B 0.0000
42 K B -0.7479
43 N B -0.8048
44 G B 0.0000
45 K B -0.9693
46 L B -0.1139
47 L B 0.3805
48 S B 0.3372
49 V B 0.4110
50 E B 0.0000
51 R B -1.0297
52 S B -0.7687
53 N B 0.0000
54 R B -0.5605
55 I B 0.2462
56 V B 0.3722
57 V B 0.0000
58 D B -0.4832
59 E B 0.0000
60 V B 0.0000
61 Y B -0.1180
62 D B -0.3796
63 Y B -0.7870
64 H B -0.9391
65 Q B -1.5323
66 G B -0.9703
67 T B 0.0000
68 Y B 0.0000
69 V B 0.0000
70 C B 0.0000
71 D B 0.0000
72 Y B 0.0000
73 T B -0.1282
74 Q B -0.7874
75 S B -0.9479
76 D B -1.4268
77 T B -0.1554
78 V B 1.0686
79 S B 0.0671
80 S B -0.2304
81 W B 0.0695
82 T B 0.1306
83 V B 0.2041
84 R B -0.0193
85 A B 0.0000
86 V B 0.0000
87 V B 0.0000
88 Q B -0.6828
89 V B 0.0000
90 R B -1.1671
91 T B 0.0355
92 I B 1.0572
93 V B 1.7325
94 G B -0.1423
95 D B -2.4220
96 T B -2.4919
97 K B -3.8670
98 D B -4.0084
99 K B -3.5942
100 T B -2.0857
101 H B -1.8697
102 T B -0.9350
103 C B 0.1299
104 P B -0.0192
105 P B 0.1062
106 C B 0.5227
107 P B -0.4067
108 A B -0.5530
109 P B -1.1138
110 E B -2.0774
111 A B -1.1813
112 A B -0.9806
113 G B -1.1429
114 G B -0.8679
115 P B 0.0000
116 S B -0.2710
117 V B 0.0000
118 F B -0.1267
119 L B 0.0000
120 F B 0.0000
121 P B -0.2789
122 P B 0.0000
123 K B 0.0000
124 P B 0.0000
125 K B -0.0852
126 D B 0.0000
127 T B 0.0000
128 L B 0.0000
129 M B 0.8874
130 I B 1.9722
131 S B 0.8514
132 R B 0.0000
133 T B 0.5758
134 P B 0.0000
135 E B -0.0816
136 V B 0.0000
137 T B 0.0000
138 C B 0.0000
139 V B 0.0000
140 V B 0.0000
141 V B 0.0000
142 D B -1.1703
143 V B 0.0000
144 S B -2.0879
145 H B -2.6445
146 E B -3.0272
147 D B -2.6984
148 P B -2.7872
149 E B -3.0892
150 V B -1.9159
151 K B -2.2365
152 F B -1.2150
153 N B -1.1560
154 W B 0.0000
155 Y B -0.5716
156 V B -0.8099
157 D B -2.0397
158 G B -0.8388
159 V B 0.6131
160 E B -0.6365
161 V B -0.5260
162 H B -1.8620
163 N B -2.1574
164 A B -1.7545
165 K B -2.3079
166 T B -1.7654
167 K B -1.7477
168 P B -1.6530
169 R B -2.1467
170 E B -1.9135
171 E B -2.3467
172 Q B 0.0000
173 Y B 0.0250
174 N B -0.7374
175 S B -0.9311
176 T B -1.4287
177 Y B -1.6254
178 R B 0.0000
179 V B 0.0000
180 V B 0.0000
181 S B 0.0000
182 V B 0.0000
183 L B 0.0000
184 T B -0.3400
185 V B 0.0000
186 L B 0.8599
187 H B 0.0000
188 Q B -1.0780
189 D B -1.2903
190 W B 0.0000
191 L B -0.9191
192 N B -1.9527
193 G B -1.9529
194 K B -2.0352
195 E B -1.9025
196 Y B 0.0000
197 K B -1.5071
198 C B 0.0000
199 K B -1.5111
200 V B 0.0000
201 S B -1.5324
202 N B 0.0000
203 K B -2.6628
204 A B -1.5680
205 L B -0.8226
206 G B -1.0371
207 A B -0.5527
208 P B -1.0248
209 I B -0.7935
210 E B -1.9943
211 K B -1.2434
212 T B -0.8867
213 I B 0.0000
214 S B 0.0000
215 K B -1.1388
216 A B -1.0823
217 K B -1.9701
218 G B -1.8730
219 Q B -2.1465
220 P B -1.9074
221 R B -2.4454
222 E B -2.7818
223 P B 0.0000
224 Q B -1.3300
225 V B 0.0000
226 Y B 0.0000
227 T B -0.7816
228 L B 0.0000
229 P B -0.3879
230 P B -0.8587
231 S B 0.0000
232 R B -2.6554
233 D B -2.7971
234 E B 0.0000
235 L B -1.8208
236 T B -1.5788
237 K B -2.1598
238 N B -2.3953
239 Q B -2.1492
240 V B 0.0000
241 S B 0.0000
242 L B 0.0000
243 T B 0.0000
244 C B 0.0000
245 L B 0.0000
246 V B 0.0000
247 K B -0.7683
248 G B -1.3419
249 F B 0.0000
250 Y B 0.0000
251 P B 0.0000
252 S B -0.5163
253 D B -0.7284
254 I B 0.0000
255 A B -0.1865
256 V B 0.0000
257 E B -0.7981
258 W B 0.0000
259 E B -1.5845
260 S B 0.0000
261 N B -1.8777
262 G B -1.7643
263 Q B -2.1612
264 P B -1.6609
265 E B 0.0000
266 N B -1.5181
267 N B -1.2506
268 Y B -0.6594
269 K B 0.0000
270 T B 0.0000
271 T B 0.0000
272 P B 0.1106
273 P B -0.0955
274 V B 0.0000
275 L B -0.2319
276 D B -0.9380
277 S B -1.5266
278 D B -2.0804
279 G B -1.1401
280 S B 0.0000
281 F B 0.0000
282 F B 0.0000
283 L B 0.0000
284 Y B 0.0000
285 S B 0.0000
286 K B 0.0000
287 L B 0.0000
288 T B -0.7233
289 V B 0.0000
290 D B -2.1860
291 K B -2.3978
292 S B -2.1095
293 R B -1.9800
294 W B 0.0000
295 Q B -2.3259
296 Q B -2.1542
297 G B -1.2715
298 N B -0.8956
299 V B 0.0049
300 F B 0.0000
301 S B 0.0000
302 C B 0.0000
303 S B 0.0000
304 V B 0.0000
305 M B 0.0000
306 H B 0.0000
307 E B -1.0794
308 A B -1.5976
309 L B -1.4089
310 H B -1.7123
311 N B -1.6136
312 H B -0.8635
313 Y B -0.2614
314 T B -0.5886
315 Q B -0.9304
316 K B -1.0148
317 S B -0.5341
318 L B 0.0000
319 S B -0.2175
320 L B -0.3692
321 S B -0.6245
322 P B -1.1024
323 G B -1.4188
324 K B -2.0301
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018