Project name: query_structure

Status: done

Started: 2026-03-16 23:17:36
Settings
Chain sequence(s) A: GCCSNPVCHLEHSNLCGGAAGG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:10)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:10)
Show buried residues

Minimal score value
-1.5207
Maximal score value
1.1457
Average score
-0.4106
Total score value
-9.0327

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.6880
2 C A -0.2906
3 C A -0.1237
4 S A -0.5644
5 N A -0.6817
6 P A 0.1162
7 V A 1.1457
8 C A 0.0065
9 H A -0.2139
10 L A 0.5791
11 E A -1.0596
12 H A -0.9535
13 S A -0.8039
14 N A -1.5207
15 L A -0.5339
16 C A -0.5929
17 G A -0.8001
18 G A -0.8501
19 A A -0.4552
20 A A -0.2859
21 G A 0.0000
22 G A -0.4621
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018