Project name: obj1 [mutate: LA45C, YD59C, IF93C, GM113C]

Status: done

Started: 2025-02-10 13:24:23
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Chain sequence(s) C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYWGQGTLVTVSS
input PDB
Selected Chain(s) C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues IF93C,LA45C,GM113C,YD59C
Energy difference between WT (input) and mutated protein (by FoldX) 7.32635 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:26)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:58)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:22)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:22)
Show buried residues

Minimal score value
-3.2747
Maximal score value
1.5458
Average score
-0.7527
Total score value
-90.3253

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E C -2.0068
2 V C -0.9129
3 Q C -1.2386
4 L C 0.0000
5 V C 0.6693
6 E C 0.2963
7 S C -0.4107
8 G C -0.9130
9 G C -0.1380
10 G C 0.7381
11 L C 1.3431
12 V C -0.0358
13 Q C -1.3366
14 P C -1.4884
15 G C -1.4134
16 G C -0.9785
17 S C -1.2309
18 L C -0.9619
19 R C -2.1461
20 L C 0.0000
21 S C -0.5418
22 C C 0.0000
23 A C -0.2021
24 A C 0.0000
25 S C -0.2017
26 D C 0.0000
27 F C 1.5458
28 T C 0.2524
29 F C 0.0000
30 R C -2.0310
31 S C -0.8844
32 Y C -1.2103
33 E C -1.0974
34 M C 0.0000
35 S C 0.0000
36 W C 0.0000
37 V C 0.0000
38 R C 0.0000
39 Q C -0.9711
40 A C -1.3772
41 P C -1.3250
42 G C -1.5908
43 K C -2.4668
44 G C -1.7452
45 A C -1.0091 mutated: LA45C
46 E C -1.0889
47 W C -0.0198
48 V C 0.0000
49 S C 0.0000
50 A C 0.0000
51 I C 0.0000
52 S C -0.8656
53 G C -1.2574
54 S C -1.2456
55 G C -1.1153
56 G C -0.7881
57 S C -0.9066
58 T C -0.9571
59 D C -1.6601 mutated: YD59C
60 Y C -1.4629
61 A C -1.6239
62 D C -2.5925
63 S C -1.7164
64 V C 0.0000
65 K C -2.6995
66 G C -1.6187
67 R C 0.0000
68 F C 0.0000
69 T C -0.9300
70 I C 0.0000
71 S C -0.5748
72 R C -1.3628
73 D C -1.9805
74 N C -2.1902
75 S C -1.7905
76 K C -2.3163
77 N C -1.6491
78 T C 0.0000
79 L C 0.0000
80 Y C -0.6694
81 L C 0.0000
82 Q C -1.2335
83 M C 0.0000
84 N C -1.3326
85 S C -1.2322
86 L C 0.0000
87 R C -2.4717
88 A C -1.8887
89 E C -2.3440
90 D C 0.0000
91 T C -0.5604
92 A C 0.0000
93 F C 0.7166 mutated: IF93C
94 Y C 0.0000
95 Y C 0.5790
96 C C 0.0000
97 A C 0.0000
98 R C 0.0000
99 L C 0.0000
100 R C -3.1445
101 D C -3.2747
102 G C -1.9615
103 F C -1.2681
104 N C -2.3116
105 K C -3.1167
106 G C -1.8486
107 F C -0.9260
108 D C -1.0863
109 Y C -0.1892
110 W C 0.6770
111 G C 0.1143
112 Q C -0.6108
113 M C 0.4795 mutated: GM113C
114 T C 0.5030
115 L C 1.1689
116 V C 0.0000
117 T C 0.1740
118 V C 0.0000
119 S C -0.7741
120 S C -1.0599
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Laboratory of Theory of Biopolymers 2018