Project name: fold_rfinf_12_12024_10_30_13_28_model_2

Status: done

Started: 2026-03-26 12:01:40
Settings
Chain sequence(s) B: SAAAKAAADRLGAGLLADSKEKAEEQAKELKERLEEE
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:55)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:56)
Show buried residues

Minimal score value
-5.5245
Maximal score value
0.9325
Average score
-2.4399
Total score value
-90.276

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S B -0.5884
2 A B -0.6679
3 A B -0.5272
4 A B -1.1027
5 K B -2.1822
6 A B -1.4318
7 A B -1.0853
8 A B -0.6437
9 D B -1.2630
10 R B -1.3223
11 L B 0.9325
12 G B 0.3406
13 A B -0.0424
14 G B -0.0274
15 L B 0.7667
16 L B 0.3333
17 A B -1.5504
18 D B -2.8574
19 S B -2.5115
20 K B -3.6919
21 E B -4.9867
22 K B -5.0310
23 A B -4.0334
24 E B -5.3372
25 E B -5.5245
26 Q B -4.4491
27 A B -3.7191
28 K B -4.7554
29 E B -4.3191
30 L B -2.4618
31 K B -3.9026
32 E B -4.6000
33 R B -4.0289
34 L B -2.2851
35 E B -4.0954
36 E B -4.2709
37 E B -3.3534
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018