| Chain sequence(s) |
A: QVQLVESGGGSVQAGGSLRLSCTASGGSEYSYSTFSLGWFRQAPGQEREAVCAIASMGGLTYYADSVKGRFTCSRDNAKNTVTLQMNNLKPEDTAIYYCAAVRGYFMRLPSSHNFRYWGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:08)
[INFO] Main: Simulation completed successfully. (00:01:08)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.6958 | |
| 2 | V | A | -1.3376 | |
| 3 | Q | A | -1.4028 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.0467 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.7558 | |
| 8 | G | A | -1.3133 | |
| 9 | G | A | -1.2191 | |
| 10 | G | A | -0.9603 | |
| 11 | S | A | -0.7202 | |
| 12 | V | A | -0.8198 | |
| 13 | Q | A | -1.8033 | |
| 14 | A | A | -2.0260 | |
| 15 | G | A | -1.9275 | |
| 16 | G | A | -1.4851 | |
| 17 | S | A | -1.5109 | |
| 18 | L | A | -1.2529 | |
| 19 | R | A | -2.1404 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.6840 | |
| 22 | C | A | 0.0000 | |
| 23 | T | A | -0.5861 | |
| 24 | A | A | -0.5921 | |
| 25 | S | A | -0.8427 | |
| 26 | G | A | -1.5483 | |
| 27 | G | A | -1.4086 | |
| 28 | S | A | -1.3022 | |
| 29 | E | A | -2.1240 | |
| 30 | Y | A | -1.3072 | |
| 31 | S | A | -1.0778 | |
| 32 | Y | A | 0.0000 | |
| 33 | S | A | -0.3027 | |
| 34 | T | A | -0.2029 | |
| 35 | F | A | 0.0000 | |
| 36 | S | A | 0.0000 | |
| 37 | L | A | 0.0000 | |
| 38 | G | A | 0.0000 | |
| 39 | W | A | 0.0000 | |
| 40 | F | A | 0.0000 | |
| 41 | R | A | -1.1948 | |
| 42 | Q | A | -1.8344 | |
| 43 | A | A | -1.7745 | |
| 44 | P | A | -1.2374 | |
| 45 | G | A | -1.7087 | |
| 46 | Q | A | -2.7986 | |
| 47 | E | A | -3.2395 | |
| 48 | R | A | -2.5302 | |
| 49 | E | A | -1.7956 | |
| 50 | A | A | -0.6409 | |
| 51 | V | A | 0.0000 | |
| 52 | C | A | 0.0000 | |
| 53 | A | A | 0.0000 | |
| 54 | I | A | 0.0000 | |
| 55 | A | A | 0.0000 | |
| 56 | S | A | 0.0000 | |
| 57 | M | A | 0.8627 | |
| 58 | G | A | 0.0300 | |
| 59 | G | A | 0.3250 | |
| 60 | L | A | 1.0892 | |
| 61 | T | A | 0.6038 | |
| 62 | Y | A | 0.7199 | |
| 63 | Y | A | -0.2874 | |
| 64 | A | A | -1.0512 | |
| 65 | D | A | -2.3253 | |
| 66 | S | A | -1.7547 | |
| 67 | V | A | 0.0000 | |
| 68 | K | A | -2.4798 | |
| 69 | G | A | -1.8412 | |
| 70 | R | A | -1.7104 | |
| 71 | F | A | 0.0000 | |
| 72 | T | A | -0.7222 | |
| 73 | C | A | 0.0000 | |
| 74 | S | A | -0.5237 | |
| 75 | R | A | -0.9846 | |
| 76 | D | A | -1.5828 | |
| 77 | N | A | -1.6374 | |
| 78 | A | A | -1.4656 | |
| 79 | K | A | -2.3032 | |
| 80 | N | A | -1.7088 | |
| 81 | T | A | -1.1529 | |
| 82 | V | A | 0.0000 | |
| 83 | T | A | -0.7475 | |
| 84 | L | A | 0.0000 | |
| 85 | Q | A | -1.0801 | |
| 86 | M | A | 0.0000 | |
| 87 | N | A | -1.8881 | |
| 88 | N | A | -2.3964 | |
| 89 | L | A | 0.0000 | |
| 90 | K | A | -3.0687 | |
| 91 | P | A | -2.0983 | |
| 92 | E | A | -2.4699 | |
| 93 | D | A | 0.0000 | |
| 94 | T | A | -1.2187 | |
| 95 | A | A | 0.0000 | |
| 96 | I | A | -0.4859 | |
| 97 | Y | A | 0.0000 | |
| 98 | Y | A | -0.3450 | |
| 99 | C | A | 0.0000 | |
| 100 | A | A | 0.0000 | |
| 101 | A | A | 0.0000 | |
| 102 | V | A | 0.0000 | |
| 103 | R | A | -1.7933 | |
| 104 | G | A | 0.0449 | |
| 105 | Y | A | 1.4868 | |
| 106 | F | A | 1.2208 | |
| 107 | M | A | 0.0000 | |
| 108 | R | A | -0.7438 | |
| 109 | L | A | 0.8722 | |
| 110 | P | A | 0.0000 | |
| 111 | S | A | -0.6787 | |
| 112 | S | A | -1.2804 | |
| 113 | H | A | -1.6275 | |
| 114 | N | A | -1.4660 | |
| 115 | F | A | 0.0000 | |
| 116 | R | A | -2.1456 | |
| 117 | Y | A | -0.9440 | |
| 118 | W | A | -0.3147 | |
| 119 | G | A | -0.4095 | |
| 120 | Q | A | -1.1885 | |
| 121 | G | A | 0.0000 | |
| 122 | T | A | 0.0000 | |
| 123 | Q | A | -1.4132 | |
| 124 | V | A | 0.0000 | |
| 125 | T | A | -1.0109 | |
| 126 | V | A | 0.0000 | |
| 127 | S | A | -1.2158 | |
| 128 | S | A | -0.9239 |