Project name: query_structure

Status: done

Started: 2026-03-17 00:57:21
Settings
Chain sequence(s) A: QVQLVESGGGSVQAGGSLRLSCTASGGSEYSYSTFSLGWFRQAPGQEREAVCAIASMGGLTYYADSVKGRFTCSRDNAKNTVTLQMNNLKPEDTAIYYCAAVRGYFMRLPSSHNFRYWGQGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:08)
Show buried residues

Minimal score value
-3.2395
Maximal score value
1.4868
Average score
-0.7991
Total score value
-102.2876

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.6958
2 V A -1.3376
3 Q A -1.4028
4 L A 0.0000
5 V A 0.0467
6 E A 0.0000
7 S A -0.7558
8 G A -1.3133
9 G A -1.2191
10 G A -0.9603
11 S A -0.7202
12 V A -0.8198
13 Q A -1.8033
14 A A -2.0260
15 G A -1.9275
16 G A -1.4851
17 S A -1.5109
18 L A -1.2529
19 R A -2.1404
20 L A 0.0000
21 S A -0.6840
22 C A 0.0000
23 T A -0.5861
24 A A -0.5921
25 S A -0.8427
26 G A -1.5483
27 G A -1.4086
28 S A -1.3022
29 E A -2.1240
30 Y A -1.3072
31 S A -1.0778
32 Y A 0.0000
33 S A -0.3027
34 T A -0.2029
35 F A 0.0000
36 S A 0.0000
37 L A 0.0000
38 G A 0.0000
39 W A 0.0000
40 F A 0.0000
41 R A -1.1948
42 Q A -1.8344
43 A A -1.7745
44 P A -1.2374
45 G A -1.7087
46 Q A -2.7986
47 E A -3.2395
48 R A -2.5302
49 E A -1.7956
50 A A -0.6409
51 V A 0.0000
52 C A 0.0000
53 A A 0.0000
54 I A 0.0000
55 A A 0.0000
56 S A 0.0000
57 M A 0.8627
58 G A 0.0300
59 G A 0.3250
60 L A 1.0892
61 T A 0.6038
62 Y A 0.7199
63 Y A -0.2874
64 A A -1.0512
65 D A -2.3253
66 S A -1.7547
67 V A 0.0000
68 K A -2.4798
69 G A -1.8412
70 R A -1.7104
71 F A 0.0000
72 T A -0.7222
73 C A 0.0000
74 S A -0.5237
75 R A -0.9846
76 D A -1.5828
77 N A -1.6374
78 A A -1.4656
79 K A -2.3032
80 N A -1.7088
81 T A -1.1529
82 V A 0.0000
83 T A -0.7475
84 L A 0.0000
85 Q A -1.0801
86 M A 0.0000
87 N A -1.8881
88 N A -2.3964
89 L A 0.0000
90 K A -3.0687
91 P A -2.0983
92 E A -2.4699
93 D A 0.0000
94 T A -1.2187
95 A A 0.0000
96 I A -0.4859
97 Y A 0.0000
98 Y A -0.3450
99 C A 0.0000
100 A A 0.0000
101 A A 0.0000
102 V A 0.0000
103 R A -1.7933
104 G A 0.0449
105 Y A 1.4868
106 F A 1.2208
107 M A 0.0000
108 R A -0.7438
109 L A 0.8722
110 P A 0.0000
111 S A -0.6787
112 S A -1.2804
113 H A -1.6275
114 N A -1.4660
115 F A 0.0000
116 R A -2.1456
117 Y A -0.9440
118 W A -0.3147
119 G A -0.4095
120 Q A -1.1885
121 G A 0.0000
122 T A 0.0000
123 Q A -1.4132
124 V A 0.0000
125 T A -1.0109
126 V A 0.0000
127 S A -1.2158
128 S A -0.9239
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018