Project name: 4-24E5

Status: done

Started: 2025-07-01 05:23:06
Settings
Chain sequence(s) H: EVKLVESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGNTYYPDTVKGRFTISRDNGKNTLYLQMSRLKSEDTAMYYCARGGYGTSWFAYWGQGTLVTVSA
L: DIVLTQSPASLAVSLGQRATISCRASKSVSTSAYSYMHWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSGTDFTLNIHPVEEEDAATYYCQHSRELPWTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:59)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:00)
Show buried residues

Minimal score value
-3.615
Maximal score value
1.6786
Average score
-0.6826
Total score value
-156.9921

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.2019
2 V H -1.3336
3 K H -1.7814
4 L H 0.0000
5 V H 0.0818
6 E H 0.0000
7 S H -0.3326
8 G H -0.6468
9 G H 0.1789
11 G H 0.7089
12 L H 1.4673
13 V H -0.0140
14 Q H -1.4781
15 P H -1.9801
16 G H -2.1487
17 G H -1.6314
18 S H -1.3988
19 L H -0.9695
20 K H -1.7973
21 L H 0.0000
22 S H -0.4590
23 C H 0.0000
24 A H -0.4849
25 T H 0.0000
26 S H -1.3069
27 G H -1.3095
28 F H -0.8221
29 T H -0.8187
30 F H 0.0000
35 S H -1.7256
36 D H -1.8966
37 Y H -0.3002
38 Y H 0.3706
39 M H 0.0000
40 Y H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H 0.0000
45 T H -2.0468
46 P H -2.1647
47 E H -3.3431
48 K H -3.6150
49 R H -3.4262
50 L H 0.0000
51 E H -0.8343
52 W H 0.0000
53 V H 0.0000
54 A H 0.0000
55 Y H 0.0000
56 I H 0.0000
57 S H -0.7963
58 N H -1.4663
59 G H -1.5199
62 G H -1.1687
63 G H -1.3289
64 N H -1.3176
65 T H -0.2616
66 Y H 0.0570
67 Y H -0.6045
68 P H 0.0000
69 D H -2.4557
70 T H -1.6860
71 V H 0.0000
72 K H -2.5350
74 G H -1.9139
75 R H -2.0115
76 F H 0.0000
77 T H -0.7576
78 I H 0.0000
79 S H -0.5784
80 R H -1.1286
81 D H -1.6776
82 N H -2.2506
83 G H -1.9185
84 K H -2.6134
85 N H -2.0461
86 T H -1.2107
87 L H 0.0000
88 Y H -0.4510
89 L H 0.0000
90 Q H -1.2495
91 M H 0.0000
92 S H -1.8299
93 R H -2.7593
94 L H 0.0000
95 K H -2.8442
96 S H -1.9642
97 E H -2.4246
98 D H 0.0000
99 T H -0.4461
100 A H 0.0000
101 M H 0.4544
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 G H 0.0000
108 G H 0.7627
109 Y H 1.1854
110 G H 0.1276
112 T H 0.2720
113 S H 0.1888
114 W H 0.0000
115 F H 0.0000
116 A H 0.2959
117 Y H 0.2590
118 W H -0.2510
119 G H 0.0000
120 Q H -1.3990
121 G H 0.0000
122 T H 0.4538
123 L H 1.6786
124 V H 0.0000
125 T H 0.3245
126 V H 0.0000
127 S H -0.4850
128 A H -0.3240
1 D L -1.7485
2 I L 0.0000
3 V L 0.6912
4 L L 0.0000
5 T L -0.6370
6 Q L -0.7140
7 S L -0.6542
8 P L -0.4301
9 A L -0.4774
10 S L -0.8557
11 L L -0.4708
12 A L -1.0525
13 V L 0.0000
14 S L -1.7342
15 L L -1.3058
16 G L -1.8432
17 Q L -2.4634
18 R L -2.6814
19 A L 0.0000
20 T L -0.6207
21 I L 0.0000
22 S L -0.9136
23 C L 0.0000
24 R L -2.3567
25 A L 0.0000
26 S L -1.0564
27 K L -1.8298
28 S L -1.3349
29 V L 0.0000
30 S L -0.0350
31 T L 0.1689
34 S L 0.1077
35 A L 0.5503
36 Y L 1.2656
37 S L 0.5336
38 Y L 0.3937
39 M L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -1.2462
45 K L -1.3785
46 P L -0.9477
47 G L -1.2921
48 Q L -1.7859
49 P L -1.2036
50 P L 0.0000
51 K L -1.2467
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.2450
56 L L 0.5375
57 A L 0.0000
65 S L -0.2562
66 N L -0.4124
67 L L 0.0247
68 E L -0.5212
69 S L -0.5631
70 G L -0.5915
71 V L 0.0000
72 P L -0.2357
74 A L -0.2074
75 R L -0.8055
76 F L 0.0000
77 S L -0.4327
78 G L -0.3617
79 S L -0.7428
80 G L -1.1643
83 S L -0.7910
84 G L -0.9602
85 T L -1.7086
86 D L -2.0731
87 F L 0.0000
88 T L -0.8217
89 L L 0.0000
90 N L -0.8560
91 I L 0.0000
92 H L -2.0352
93 P L -1.8434
94 V L 0.0000
95 E L -2.6803
96 E L -3.3175
97 E L -2.8111
98 D L 0.0000
99 A L -1.8539
100 A L 0.0000
101 T L -1.1315
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 H L 0.0000
107 S L 0.0000
108 R L -1.2696
109 E L -1.6710
114 L L -0.5100
115 P L -0.5685
116 W L -0.2714
117 T L -0.1000
118 F L 0.0000
119 G L 0.0000
120 G L -1.2680
121 G L -1.2574
122 T L 0.0000
123 K L -1.5812
124 L L 0.0000
125 E L -2.3829
126 I L -1.9221
127 K L -2.1384
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Laboratory of Theory of Biopolymers 2018