Project name: query_structure

Status: done

Started: 2026-03-17 00:19:28
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Chain sequence(s) A: QVQLQESGGGLVQAGDSLRLSCAASGRTFSTTGMGWFRQAPGKEREFVAAVSWRSGNTYYADSVKGRFTISRDNAKTTVFLQMNSLKPEDTAVYYCAANPTGSYGAATSRYNYWGQGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:11)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:12)
Show buried residues

Minimal score value
-3.5118
Maximal score value
1.046
Average score
-0.929
Total score value
-115.1957

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.7482
2 V A -1.5955
3 Q A -1.8540
4 L A 0.0000
5 Q A -1.7483
6 E A 0.0000
7 S A -1.0754
8 G A -0.9927
9 G A -0.8216
10 G A -0.0711
11 L A 1.0460
12 V A -0.1630
13 Q A -1.4730
14 A A -1.7129
15 G A -1.7033
16 D A -1.7718
17 S A -1.5969
18 L A -1.1791
19 R A -2.0434
20 L A 0.0000
21 S A -0.8215
22 C A 0.0000
23 A A -1.0380
24 A A 0.0000
25 S A -1.4873
26 G A -1.9310
27 R A -2.2626
28 T A -1.2531
29 F A 0.0000
30 S A -1.2118
31 T A -0.8965
32 T A 0.0000
33 G A 0.0000
34 M A 0.0000
35 G A 0.0000
36 W A 0.0000
37 F A 0.0000
38 R A -1.3617
39 Q A -2.1969
40 A A -2.0626
41 P A -1.4410
42 G A -1.9658
43 K A -3.3492
44 E A -3.5118
45 R A -2.6630
46 E A -1.9179
47 F A -0.6938
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 V A 0.0000
52 S A 0.0000
53 W A -1.2148
54 R A -2.1245
55 S A -1.5994
56 G A -1.4426
57 N A -1.4562
58 T A -0.2620
59 Y A 0.2374
60 Y A -0.4536
61 A A -1.2208
62 D A -2.3634
63 S A -1.8026
64 V A 0.0000
65 K A -2.5373
66 G A -1.8064
67 R A -1.5334
68 F A 0.0000
69 T A -0.7333
70 I A 0.0000
71 S A -0.6382
72 R A -1.0638
73 D A -1.6741
74 N A -2.1009
75 A A -1.5885
76 K A -2.2561
77 T A -1.8215
78 T A 0.0000
79 V A 0.0000
80 F A -0.4841
81 L A 0.0000
82 Q A -1.1719
83 M A 0.0000
84 N A -1.6356
85 S A -1.4827
86 L A 0.0000
87 K A -2.4810
88 P A -1.8820
89 E A -2.3245
90 D A 0.0000
91 T A -0.9600
92 A A 0.0000
93 V A -0.6601
94 Y A 0.0000
95 Y A -0.6503
96 C A 0.0000
97 A A 0.0000
98 A A 0.0000
99 N A 0.0000
100 P A -0.6501
101 T A -0.6602
102 G A -0.7149
103 S A -0.6297
104 Y A -0.2570
105 G A 0.0160
106 A A -0.0539
107 A A -0.5625
108 T A -1.0130
109 S A -1.3460
110 R A -2.2039
111 Y A 0.0000
112 N A -1.5087
113 Y A -0.6234
114 W A -0.3966
115 G A -0.9563
116 Q A -1.6172
117 G A -1.0890
118 T A 0.0000
119 Q A -1.2055
120 V A 0.0000
121 T A -0.2983
122 V A 0.0000
123 S A -0.8225
124 S A -0.8451
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Laboratory of Theory of Biopolymers 2018