Project name: WH25

Status: done

Started: 2026-02-13 01:54:44
Settings
Chain sequence(s) H: QVQLVESGGGLVQPGGSLRLSCAASGSISSHNDMSWYRQAPGKGLELVAFIASGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCNSRTYDGEKTYWGQGTTVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:06)
Show buried residues

Minimal score value
-3.1555
Maximal score value
1.194
Average score
-0.6877
Total score value
-80.4592

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.6158
2 V H -1.1433
3 Q H -1.0579
4 L H 0.0000
5 V H 1.1221
6 E H 0.0000
7 S H -0.2954
8 G H -0.9070
9 G H -0.3110
11 G H 0.3258
12 L H 1.1940
13 V H -0.0160
14 Q H -1.3671
15 P H -1.4406
16 G H -1.4493
17 G H -0.9716
18 S H -0.9349
19 L H -0.6367
20 R H -1.5558
21 L H 0.0000
22 S H -0.1786
23 C H 0.0000
24 A H -0.0369
25 A H -0.3851
26 S H -0.7813
27 G H -0.7958
28 S H -0.8575
29 I H 0.0000
30 S H -1.4912
35 S H -1.2221
36 H H -1.4439
37 N H -1.1695
38 D H -1.0611
39 M H 0.0000
40 S H 0.0000
41 W H 0.0000
42 Y H 0.6659
43 R H 0.0000
44 Q H -0.4854
45 A H -0.9555
46 P H -0.8413
47 G H -1.0505
48 K H -1.2940
49 G H -0.7436
50 L H 0.3059
51 E H -0.0072
52 L H 0.8717
53 V H 0.0000
54 A H 0.0000
55 F H 0.6709
56 I H 0.0000
57 A H -0.6858
58 S H -1.2527
59 G H -1.0090
63 G H -0.5950
64 S H -0.1861
65 T H 0.4534
66 Y H 1.0965
67 Y H 0.0266
68 A H -0.7741
69 D H -2.2599
70 S H -1.6928
71 V H 0.0000
72 K H -2.3547
74 G H -1.6874
75 R H -1.4812
76 F H 0.0000
77 T H -0.6011
78 I H 0.0000
79 S H -0.4935
80 R H -1.2444
81 D H -1.9298
82 N H -2.4701
83 S H -1.9348
84 K H -2.5959
85 N H -2.0161
86 T H -1.0912
87 L H 0.0000
88 Y H -0.3358
89 L H 0.0000
90 Q H -1.0565
91 M H 0.0000
92 N H -1.2956
93 S H -1.2425
94 L H 0.0000
95 R H -2.2383
96 A H -1.6730
97 E H -2.1873
98 D H 0.0000
99 T H -0.6540
100 A H 0.0000
101 V H 0.2360
102 Y H 0.0000
103 Y H 0.5246
104 C H 0.0000
105 N H 0.0000
106 S H 0.0000
107 R H -1.7585
108 T H -1.7304
109 Y H -1.8533
110 D H -2.4406
113 G H -2.3918
114 E H -3.1555
115 K H -3.0179
116 T H -1.3182
117 Y H -0.7247
118 W H 0.2072
119 G H -0.0286
120 Q H -0.7858
121 G H -0.1402
122 T H -0.1164
123 T H 0.0061
124 V H 0.0000
125 T H 0.0112
126 V H 0.0000
127 S H -0.5938
128 S H -0.5799
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018