Project name: Lad-GGGGSGGGGS-SnapTag

Status: done

Started: 2025-06-30 20:50:04
Settings
Chain sequence(s) A: QVQLVQSGAEVKKPGASVKVSCKASGLTIEDYYMHWVRQAPGQGLEWMGWIDPENGDTEYGPKFQGRVTMTRDTSINTAYMELSRLRSDDTAVYYCAVHNAHYGTWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCSGGGGSGGGGSDKDCEMKRTTLDSPLGKLELSGCEQGLHEIIFLGKGTSAADAVEVPAPAAVLGGPEPLMQATAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYSHLAALAGNPAATAAVKTALSGNPVPILIPCHRVVQGDLDVGGYEGGLAVKEWLLAHEGHRLGKPGLG
B: DVVMTQSPLSLPVTLGQPASISCRSSQSLLHSSGNTYLEWYQQRPGQSPRPLIYKISTRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQGSHVPYTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:12:00)
[INFO]       Main:     Simulation completed successfully.                                          (00:12:07)
Show buried residues

Minimal score value
-4.1923
Maximal score value
1.5492
Average score
-0.7187
Total score value
-455.6667

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.3360
2 V A -0.6536
3 Q A -1.2958
4 L A 0.0000
5 V A -0.0680
6 Q A 0.0000
7 S A -0.6793
8 G A -1.0848
9 A A -0.9826
10 E A -1.5602
11 V A -0.8694
12 K A -1.6575
13 K A -2.5452
14 P A -2.3976
15 G A -1.9961
16 A A -1.6099
17 S A -1.6857
18 V A 0.0000
19 K A -2.0304
20 V A 0.0000
21 S A -0.6269
22 C A 0.0000
23 K A -0.6807
24 A A 0.0000
25 S A -0.6983
26 G A -0.8658
27 L A -0.6850
28 T A -0.8027
29 I A 0.0000
30 E A -2.4912
31 D A -2.1501
32 Y A -0.9835
33 Y A -0.2866
34 M A 0.0000
35 H A 0.0000
36 W A 0.0000
37 V A 0.0000
38 R A -0.4269
39 Q A -0.6841
40 A A -1.0323
41 P A -1.0172
42 G A -1.2133
43 Q A -1.7498
44 G A -1.1225
45 L A 0.0000
46 E A -0.6990
47 W A 0.0000
48 M A 0.0000
49 G A 0.0000
50 W A -0.1774
51 I A 0.0000
52 D A -2.0274
53 P A 0.0000
54 E A -3.4450
55 N A -3.0085
56 G A -2.4356
57 D A -2.6250
58 T A -1.2379
59 E A -0.8212
60 Y A -0.6211
61 G A 0.0000
62 P A -1.6095
63 K A -2.2306
64 F A 0.0000
65 Q A -2.0867
66 G A -1.5980
67 R A -1.5771
68 V A 0.0000
69 T A -0.7499
70 M A 0.0000
71 T A -0.7919
72 R A -1.5033
73 D A -0.9478
74 T A -0.9500
75 S A -0.0301
76 I A 0.5311
77 N A -0.3962
78 T A 0.0000
79 A A 0.0000
80 Y A -0.7502
81 M A 0.0000
82 E A -1.2930
83 L A 0.0000
84 S A -1.7785
85 R A -2.7101
86 L A 0.0000
87 R A -3.3740
88 S A -2.3223
89 D A -2.5396
90 D A 0.0000
91 T A -0.9969
92 A A 0.0000
93 V A 0.1486
94 Y A 0.0000
95 Y A 0.0000
96 C A 0.0000
97 A A 0.0000
98 V A 0.0000
99 H A 0.0000
100 N A -0.1408
101 A A -0.2465
102 H A -0.6779
103 Y A 0.5132
104 G A -0.0632
105 T A 0.0000
106 W A 0.0000
107 F A 0.0000
108 A A 0.0000
109 Y A -0.0036
110 W A -0.2760
111 G A 0.0000
112 Q A -1.3766
113 G A -0.5997
114 T A 0.0000
115 L A -0.2127
116 V A 0.0000
117 T A 0.0000
118 V A 0.0000
119 S A -1.3592
120 S A -0.9434
121 A A -0.6076
122 S A -0.6885
123 T A -0.8798
124 K A -1.2234
125 G A -1.3147
126 P A -0.5693
127 S A -0.4451
128 V A 0.0000
129 F A 0.0000
130 P A -1.3297
131 L A 0.0000
132 A A -1.2922
133 P A 0.0000
134 S A -0.7825
135 S A -0.2893
136 K A -0.3031
137 S A 0.0000
138 T A -0.3321
139 S A -0.6765
140 G A -0.9336
141 G A -0.2790
142 T A -0.3627
143 A A 0.0000
144 A A 0.0000
145 L A 0.0000
146 G A 0.0000
147 C A 0.0000
148 L A 0.0000
149 V A 0.0000
150 K A 0.0000
151 D A -0.3810
152 Y A 0.0000
153 F A 0.0000
154 P A 0.0000
155 E A -0.4463
156 P A -0.6736
157 V A -0.5375
158 T A -0.4698
159 V A -0.1083
160 S A -0.3450
161 W A 0.0000
162 N A -0.7122
163 S A -0.6431
164 G A -0.4696
165 A A -0.2141
166 L A 0.0328
167 T A -0.1505
168 S A -0.1610
169 G A -0.1855
170 V A 0.1944
171 H A -0.2933
172 T A 0.0392
173 F A 0.0000
174 P A -0.3624
175 A A 0.2264
176 V A 0.4543
177 L A 1.1735
178 Q A 0.2908
179 S A -0.0638
180 S A -0.2071
181 G A 0.0428
182 L A 0.1387
183 Y A 0.4718
184 S A 0.0000
185 L A 0.0000
186 S A 0.0000
187 S A 0.0000
188 V A 0.0000
189 V A 0.0000
190 T A -0.1037
191 V A 0.0000
192 P A -0.4042
193 S A 0.0000
194 S A -0.4451
195 S A -0.4336
196 L A -0.7110
197 G A -1.0319
198 T A -0.5779
199 Q A -1.0756
200 T A -1.0385
201 Y A 0.0000
202 I A -1.1981
203 C A 0.0000
204 N A -1.3844
205 V A 0.0000
206 N A -1.7471
207 H A 0.0000
208 K A -2.8677
209 P A -1.8093
210 S A -1.8635
211 N A -2.5278
212 T A -2.0109
213 K A -2.6240
214 V A -1.5400
215 D A -2.4386
216 K A -2.0243
217 K A -2.3424
218 V A 0.0000
219 E A -2.8313
220 P A -1.8549
221 K A -2.3648
222 S A -1.1058
223 C A -0.3811
224 S A -0.6410
225 G A -0.9269
226 G A -1.0490
227 G A -1.2336
228 G A -1.2387
229 S A -1.1344
230 G A -1.2114
231 G A -1.2344
232 G A -1.4296
233 G A -1.8458
234 S A -2.3811
235 D A -3.4194
236 K A -4.1923
237 D A -3.8885
238 C A -3.2175
239 E A -3.1102
240 M A -2.0871
241 K A -2.4627
242 R A -2.4244
243 T A -1.2187
244 T A -0.9848
245 L A 0.0000
246 D A -1.7991
247 S A 0.0000
248 P A -0.7034
249 L A 0.0000
250 G A -1.2051
251 K A -1.8389
252 L A 0.0000
253 E A -0.9066
254 L A 0.0000
255 S A 0.0000
256 G A 0.0000
257 C A 0.0000
258 E A -3.6939
259 Q A -2.8736
260 G A 0.0000
261 L A 0.0000
262 H A -0.5490
263 E A 0.0000
264 I A 0.0000
265 I A 0.3429
266 F A -0.1634
267 L A -0.5452
268 G A -1.2411
269 K A -2.0499
270 G A -1.3350
271 T A -1.0783
272 S A -0.8297
273 A A -0.4624
274 A A -0.5372
275 D A -1.5127
276 A A -0.3993
277 V A 0.3820
278 E A -1.1583
279 V A -0.6448
280 P A -0.6419
281 A A -0.6544
282 P A -0.2683
283 A A 0.3662
284 A A 0.7537
285 V A 1.0958
286 L A 1.5492
287 G A 0.0066
288 G A -1.3523
289 P A 0.0000
290 E A -2.5121
291 P A 0.0000
292 L A 0.0000
293 M A -0.0446
294 Q A -0.1015
295 A A 0.0000
296 T A 0.0000
297 A A 0.3153
298 W A 0.0000
299 L A 0.0000
300 N A -0.5662
301 A A 0.0000
302 Y A 0.0000
303 F A 0.0000
304 H A -1.2236
305 Q A -1.7076
306 P A -1.9014
307 E A -2.6585
308 A A -2.2100
309 I A 0.0000
310 E A -2.8146
311 E A -2.5727
312 F A -0.7699
313 P A -0.2851
314 V A 0.6237
315 P A 0.0000
316 A A -0.4737
317 L A -0.1837
318 H A -0.9297
319 H A 0.0000
320 P A -0.9357
321 V A 0.0000
322 F A 0.0000
323 Q A -1.9017
324 Q A -1.9578
325 E A -2.4773
326 S A -1.3007
327 F A -0.4197
328 T A -0.5002
329 R A -1.1711
330 Q A -0.7590
331 V A 0.0000
332 L A 0.0000
333 W A -0.3025
334 K A -0.6768
335 L A 0.0000
336 L A -0.4983
337 K A -1.4182
338 V A -0.1793
339 V A 0.0000
340 K A -1.5555
341 F A -0.9737
342 G A -1.2002
343 E A -1.3434
344 V A -0.5281
345 I A 0.0000
346 S A -0.8744
347 Y A 0.0000
348 S A -0.9101
349 H A -1.1830
350 L A 0.0000
351 A A 0.0000
352 A A -0.8585
353 L A -0.2712
354 A A -0.6987
355 G A -1.1055
356 N A -1.5600
357 P A -1.1035
358 A A -0.6427
359 A A -0.5173
360 T A -0.5416
361 A A -0.1025
362 A A -0.1173
363 V A 0.0000
364 K A -0.3667
365 T A -0.1752
366 A A 0.0000
367 L A 0.0000
368 S A -0.8773
369 G A -0.6392
370 N A 0.0000
371 P A 0.0000
372 V A 0.0000
373 P A -0.1902
374 I A 0.0000
375 L A 0.0000
376 I A 0.0000
377 P A 0.0000
378 C A 0.0000
379 H A 0.0000
380 R A 0.0000
381 V A 0.0000
382 V A 0.0000
383 Q A -1.2573
384 G A -1.0955
385 D A -1.7104
386 L A -0.3887
387 D A -0.9843
388 V A -0.6365
389 G A -0.4460
390 G A -0.8817
391 Y A -0.9747
392 E A -1.9201
393 G A -1.1943
394 G A -0.9034
395 L A -0.0278
396 A A -0.1090
397 V A 0.0000
398 K A 0.0000
399 E A -1.2022
400 W A -0.4499
401 L A 0.0000
402 L A 0.0000
403 A A -1.0680
404 H A -0.7450
405 E A 0.0000
406 G A -1.2140
407 H A -1.8071
408 R A -2.7579
409 L A -1.8785
410 G A -1.8744
411 K A -2.0743
412 P A -1.3550
413 G A -0.7324
414 L A 0.7789
415 G A 0.1120
1 D B -1.3171
2 V B 0.0000
3 V B 0.6733
4 M B 0.0000
5 T B -0.4126
6 Q B 0.0000
7 S B -0.2057
8 P B 0.3306
9 L B 1.0971
10 S B 0.1478
11 L B -0.1263
12 P B -0.7752
13 V B 0.0000
14 T B -1.0032
15 L B -0.7949
16 G B -1.2494
17 Q B -1.4984
18 P B -1.7654
19 A B 0.0000
20 S B -0.8815
21 I B 0.0000
22 S B -0.9929
23 C B 0.0000
24 R B -2.3569
25 S B 0.0000
26 S B -1.0352
27 Q B -1.5195
28 S B -0.8481
29 L B 0.0000
30 L B 0.7903
31 H B -0.1062
32 S B -0.3638
33 S B -0.5048
34 G B -0.5085
35 N B -0.4541
36 T B 0.0000
37 Y B -0.0070
38 L B 0.0000
39 E B 0.0000
40 W B 0.0000
41 Y B 0.0000
42 Q B 0.0000
43 Q B -0.7757
44 R B -1.3231
45 P B -1.2904
46 G B -1.5034
47 Q B -1.7760
48 S B -1.1540
49 P B 0.0000
50 R B -0.6203
51 P B 0.0000
52 L B 0.0000
53 I B 0.0000
54 Y B 0.0000
55 K B -0.8016
56 I B -0.5087
57 S B -0.6389
58 T B -0.6600
59 R B -1.2044
60 F B -0.3263
61 S B -0.3554
62 G B -0.7846
63 V B -0.8047
64 P B -1.1873
65 D B -2.3553
66 R B -2.1657
67 F B 0.0000
68 S B -1.3923
69 G B 0.0000
70 S B -0.9492
71 G B -1.0904
72 S B -0.7474
73 G B -0.6966
74 T B -1.5458
75 D B -2.3434
76 F B 0.0000
77 T B -1.1989
78 L B 0.0000
79 K B -2.1367
80 I B 0.0000
81 S B -2.3048
82 R B -2.9120
83 V B 0.0000
84 E B -2.1088
85 A B -1.9003
86 E B -2.0844
87 D B 0.0000
88 V B 0.0000
89 G B 0.0000
90 V B -0.1559
91 Y B 0.0000
92 Y B 0.0000
93 C B 0.0000
94 F B 0.0000
95 Q B 0.0000
96 G B 0.0000
97 S B 0.0000
98 H B -0.0470
99 V B 0.6438
100 P B -0.1240
101 Y B 0.3357
102 T B 0.1055
103 F B 0.0000
104 G B 0.0000
105 G B -0.3802
106 G B 0.0000
107 T B 0.0000
108 K B -0.6430
109 V B 0.0000
110 E B -1.2009
111 I B 0.0000
112 K B -1.1882
113 R B -0.8776
114 T B -0.1496
115 V B 0.1927
116 A B -0.0845
117 A B -0.1688
118 P B 0.0000
119 S B -0.2140
120 V B 0.0000
121 F B 0.0000
122 I B 0.0000
123 F B 0.0000
124 P B -0.6152
125 P B -0.8718
126 S B -1.9483
127 D B -3.2631
128 E B -3.2753
129 Q B 0.0000
130 L B -2.3664
131 K B -2.9453
132 S B -1.8173
133 G B -1.2883
134 T B -1.0266
135 A B 0.0000
136 S B 0.0000
137 V B 0.0000
138 V B 0.0000
139 C B 0.0000
140 L B 0.0000
141 L B 0.0000
142 N B 0.0000
143 N B -0.8197
144 F B 0.0000
145 Y B 0.0000
146 P B -1.3837
147 R B -2.2697
148 E B -2.8582
149 A B -2.1565
150 K B -2.4235
151 V B -1.2408
152 Q B -0.8660
153 W B 0.0000
154 K B -0.7143
155 V B 0.0000
156 D B -2.0204
157 N B -1.6376
158 A B -0.4657
159 L B 0.2361
160 Q B -0.5159
161 S B -0.7598
162 G B -1.2515
163 N B -1.5500
164 S B -1.4884
165 Q B -1.5159
166 E B -1.8906
167 S B -1.0033
168 V B -0.7238
169 T B 0.0000
170 E B -2.1671
171 Q B 0.0000
172 D B -2.0822
173 S B -2.2883
174 K B -2.5984
175 D B -1.7911
176 S B 0.0000
177 T B 0.0000
178 Y B 0.0000
179 S B 0.0000
180 L B 0.0000
181 S B 0.0000
182 S B 0.0000
183 T B -0.7597
184 L B 0.0000
185 T B -0.6144
186 L B -0.7357
187 S B -0.9477
188 K B -2.0014
189 A B -1.7212
190 D B -2.2018
191 Y B 0.0000
192 E B -3.3405
193 K B -3.4974
194 H B -2.9260
195 K B -3.1478
196 V B -1.4026
197 Y B 0.0000
198 A B 0.0000
199 C B 0.0000
200 E B -0.6277
201 V B 0.0000
202 T B -1.2398
203 H B 0.0000
204 Q B -1.6981
205 G B -0.4696
206 L B -0.2919
207 S B -0.4731
208 S B -0.3042
209 P B -0.5227
210 V B 0.0678
211 T B -0.1794
212 K B 0.0000
213 S B -0.2149
214 F B 0.0000
215 N B -1.5668
216 R B -2.1986
217 G B -1.5605
218 E B -1.7979
219 C B -0.9969
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Laboratory of Theory of Biopolymers 2018