| Chain sequence(s) |
A: FGGHKFG
C: FGGHKFG B: FGGHKFG E: FGGHKFG D: FGGHKFG G: FGGHKFG F: FGGHKFG I: FGGHKFG H: FGGHKFG K: FGGHKFG J: FGGHKFG M: FGGHKFG L: FGGHKFG O: FGGHKFG N: FGGHKFG Q: FGGHKFG P: FGGHKFG S: FGGHKFG R: FGGHKFG T: FGGHKFG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:08)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:08)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:08)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:08)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:08)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:52)
[INFO] Main: Simulation completed successfully. (00:04:58)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 0.0818 | |
| 2 | G | A | 0.0000 | |
| 3 | G | A | 0.0000 | |
| 4 | H | A | 0.0000 | |
| 5 | K | A | -2.1037 | |
| 6 | F | A | -0.5617 | |
| 7 | G | A | -0.8194 | |
| 1 | F | B | 0.2180 | |
| 2 | G | B | 0.0000 | |
| 3 | G | B | 0.0000 | |
| 4 | H | B | 0.0000 | |
| 5 | K | B | -1.9905 | |
| 6 | F | B | 0.0000 | |
| 7 | G | B | -1.3694 | |
| 1 | F | C | 0.0902 | |
| 2 | G | C | 0.0000 | |
| 3 | G | C | 0.0000 | |
| 4 | H | C | 0.0000 | |
| 5 | K | C | -1.8594 | |
| 6 | F | C | -0.9369 | |
| 7 | G | C | -0.6726 | |
| 1 | F | D | 1.2920 | |
| 2 | G | D | -0.5223 | |
| 3 | G | D | -1.2122 | |
| 4 | H | D | -1.6189 | |
| 5 | K | D | -1.1669 | |
| 6 | F | D | 0.6753 | |
| 7 | G | D | 0.1477 | |
| 1 | F | E | 1.7760 | |
| 2 | G | E | 0.2548 | |
| 3 | G | E | -0.7732 | |
| 4 | H | E | -1.7118 | |
| 5 | K | E | -2.0098 | |
| 6 | F | E | -1.1142 | |
| 7 | G | E | -0.7873 | |
| 1 | F | F | -0.7792 | |
| 2 | G | F | -1.7434 | |
| 3 | G | F | 0.0000 | |
| 4 | H | F | -0.8055 | |
| 5 | K | F | 0.3219 | |
| 6 | F | F | 1.7955 | |
| 7 | G | F | 0.8887 | |
| 1 | F | G | 2.4893 | |
| 2 | G | G | 0.0000 | |
| 3 | G | G | -0.5013 | |
| 4 | H | G | 0.0000 | |
| 5 | K | G | -2.5331 | |
| 6 | F | G | -1.0688 | |
| 7 | G | G | -0.9942 | |
| 1 | F | H | 3.1165 | |
| 2 | G | H | 0.0000 | |
| 3 | G | H | -0.2075 | |
| 4 | H | H | 0.0000 | |
| 5 | K | H | -2.3526 | |
| 6 | F | H | 0.0000 | |
| 7 | G | H | -1.3641 | |
| 1 | F | I | 3.6061 | |
| 2 | G | I | 2.0214 | |
| 3 | G | I | -0.0180 | |
| 4 | H | I | -1.9869 | |
| 5 | K | I | -2.5264 | |
| 6 | F | I | 0.0000 | |
| 7 | G | I | -1.4387 | |
| 1 | F | J | 3.3105 | |
| 2 | G | J | 1.2774 | |
| 3 | G | J | -0.7866 | |
| 4 | H | J | -2.3871 | |
| 5 | K | J | -2.4390 | |
| 6 | F | J | 0.0000 | |
| 7 | G | J | -0.9845 | |
| 1 | F | K | 2.4533 | |
| 2 | G | K | 0.2498 | |
| 3 | G | K | -1.3905 | |
| 4 | H | K | -2.2751 | |
| 5 | K | K | -2.1685 | |
| 6 | F | K | 0.2941 | |
| 7 | G | K | -0.2866 | |
| 1 | F | L | 2.5230 | |
| 2 | G | L | 0.4768 | |
| 3 | G | L | -1.0804 | |
| 4 | H | L | -2.0672 | |
| 5 | K | L | -2.6804 | |
| 6 | F | L | -1.2259 | |
| 7 | G | L | -1.0731 | |
| 1 | F | M | 3.1810 | |
| 2 | G | M | 1.4337 | |
| 3 | G | M | -0.5088 | |
| 4 | H | M | -2.1397 | |
| 5 | K | M | -2.6053 | |
| 6 | F | M | -1.5625 | |
| 7 | G | M | -1.3281 | |
| 1 | F | N | 3.1051 | |
| 2 | G | N | 1.6027 | |
| 3 | G | N | -0.1840 | |
| 4 | H | N | -1.6202 | |
| 5 | K | N | -2.0879 | |
| 6 | F | N | 0.0000 | |
| 7 | G | N | -0.8719 | |
| 1 | F | O | 0.4369 | |
| 2 | G | O | -0.1900 | |
| 3 | G | O | 0.0000 | |
| 4 | H | O | -1.5492 | |
| 5 | K | O | -1.2232 | |
| 6 | F | O | 0.6915 | |
| 7 | G | O | 1.0424 | |
| 1 | F | P | 2.6986 | |
| 2 | G | P | 1.0800 | |
| 3 | G | P | -0.4158 | |
| 4 | H | P | -1.6010 | |
| 5 | K | P | -2.0777 | |
| 6 | F | P | 0.0000 | |
| 7 | G | P | -0.8094 | |
| 1 | F | Q | 2.1090 | |
| 2 | G | Q | 0.7962 | |
| 3 | G | Q | -0.7766 | |
| 4 | H | Q | -1.5507 | |
| 5 | K | Q | -1.9816 | |
| 6 | F | Q | -1.1646 | |
| 7 | G | Q | -0.9628 | |
| 1 | F | R | 0.8264 | |
| 2 | G | R | -0.3601 | |
| 3 | G | R | -1.3106 | |
| 4 | H | R | -1.4013 | |
| 5 | K | R | -0.9093 | |
| 6 | F | R | 1.0574 | |
| 7 | G | R | 0.3766 | |
| 1 | F | S | 2.1304 | |
| 2 | G | S | 0.0369 | |
| 3 | G | S | -1.4557 | |
| 4 | H | S | -2.0987 | |
| 5 | K | S | -1.2836 | |
| 6 | F | S | 0.5453 | |
| 7 | G | S | 0.1558 | |
| 1 | F | T | 1.4254 | |
| 2 | G | T | -0.5532 | |
| 3 | G | T | -1.2854 | |
| 4 | H | T | -1.6612 | |
| 5 | K | T | -0.8289 | |
| 6 | F | T | 1.6518 | |
| 7 | G | T | 0.6486 |