Project name: 6afa96b07de3b54

Status: done

Started: 2025-08-13 01:19:59
Settings
Chain sequence(s) H: EVKLVESGGGLVQPKGSLKLSCAASGFTFNTYAMTWVRQAPGKGLEWVARIRSKSDNYATYYADSVKDRFTISRDDSQSMVYLQMNNLKTEDTAVYYCVTATGYWGQGTTLTVSS
L: DILMTQSPSSLTVTAGQKVTMSCKSSQSLLNSGNQKNYLTWYQQKPGQPPKLLIYWTSTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDYSSPYTFGGGTKLELK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:24)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:26)
Show buried residues

Minimal score value
-3.1705
Maximal score value
1.198
Average score
-0.707
Total score value
-161.2069

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.1416
2 V H -1.1663
3 K H -1.7459
4 L H 0.0000
5 V H 0.2569
6 E H -0.0871
7 S H -0.5599
8 G H -0.8379
9 G H -0.3389
11 G H 0.3779
12 L H 1.1980
13 V H -0.1766
14 Q H -1.7358
15 P H -2.3640
16 K H -3.1705
17 G H -2.0696
18 S H -1.6273
19 L H -0.6634
20 K H -1.3678
21 L H 0.0000
22 S H -0.2715
23 C H 0.0000
24 A H -0.1866
25 A H 0.0000
26 S H -1.0827
27 G H -1.3034
28 F H -0.5151
29 T H -0.2073
30 F H 0.0000
35 N H -1.5779
36 T H -0.8050
37 Y H -0.0379
38 A H -0.4718
39 M H 0.0000
40 T H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.8426
45 A H -1.2331
46 P H -0.9966
47 G H -1.4898
48 K H -2.2778
49 G H -1.3773
50 L H 0.0000
51 E H -0.9367
52 W H 0.0000
53 V H 0.0000
54 A H 0.0000
55 R H -0.1826
56 I H 0.0000
57 R H -1.5345
58 S H 0.0000
59 K H -2.8774
60 S H -2.0254
61 D H -2.3750
62 N H -2.3918
63 Y H -1.4624
64 A H -0.9657
65 T H -0.2466
66 Y H -0.0987
67 Y H -0.7524
68 A H -1.5377
69 D H -2.4621
70 S H -1.8063
71 V H 0.0000
72 K H -2.5879
74 D H -2.9140
75 R H -2.4251
76 F H 0.0000
77 T H -0.8823
78 I H 0.0000
79 S H -0.2921
80 R H 0.0000
81 D H -1.4920
82 D H -1.6862
83 S H -1.2693
84 Q H -1.6909
85 S H -1.1194
86 M H -0.5826
87 V H 0.0000
88 Y H -0.3004
89 L H 0.0000
90 Q H -0.9530
91 M H 0.0000
92 N H -2.2641
93 N H -3.0981
94 L H 0.0000
95 K H -2.9102
96 T H -1.9718
97 E H -2.3174
98 D H 0.0000
99 T H -0.6861
100 A H 0.0000
101 V H 0.0597
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 V H 0.0000
106 T H 0.0000
107 A H 0.2196
115 T H 0.1069
116 G H 0.3131
117 Y H 0.6377
118 W H -0.0755
119 G H 0.0000
120 Q H -1.4435
121 G H -0.6638
122 T H -0.3406
123 T H -0.0971
124 L H 0.0000
125 T H -0.0878
126 V H 0.0000
127 S H -0.8616
128 S H -0.4860
1 D L -1.5241
2 I L -0.4357
3 L L 0.6300
4 M L 0.0000
5 T L -0.4679
6 Q L -0.6873
7 S L -0.8131
8 P L -0.5875
9 S L -0.6766
10 S L -0.6432
11 L L -0.2520
12 T L -0.4593
13 V L -0.7967
14 T L -1.2886
15 A L -1.4078
16 G L -1.5521
17 Q L -2.2031
18 K L -2.4240
19 V L 0.0000
20 T L -0.5035
21 M L 0.0000
22 S L -0.9075
23 C L 0.0000
24 K L -2.1779
25 S L 0.0000
26 S L -0.9962
27 Q L -1.5900
28 S L -1.0080
29 L L 0.0000
30 L L -0.6229
31 N L -1.1192
32 S L -1.2839
33 G L -1.4794
34 N L -2.0545
35 Q L -2.1495
36 K L -1.5069
37 N L -0.6069
38 Y L 0.1238
39 L L 0.0000
40 T L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.1453
46 P L -0.8603
47 G L -1.3529
48 Q L -1.8500
49 P L -1.1497
50 P L 0.0000
51 K L -0.8884
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.1583
56 W L 0.2426
57 T L 0.0000
65 S L -0.3901
66 T L -0.2763
67 R L -1.1105
68 E L -0.7660
69 S L -0.7098
70 G L -0.9695
71 V L 0.0000
72 P L -1.3556
74 D L -2.2160
75 R L -1.6026
76 F L 0.0000
77 T L -0.8326
78 G L 0.0000
79 S L -0.5920
80 G L -1.0909
83 S L -1.1323
84 G L -1.2226
85 T L -1.6583
86 D L -2.2295
87 F L 0.0000
88 T L -0.7918
89 L L 0.0000
90 T L -0.5545
91 I L 0.0000
92 S L -1.6192
93 S L -1.7110
94 V L 0.0000
95 Q L -1.3213
96 A L -1.0530
97 E L -1.6382
98 D L 0.0000
99 L L 0.1118
100 A L 0.0000
101 V L -0.0774
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 N L 0.0000
107 D L 0.1318
108 Y L 0.3518
109 S L -0.1810
114 S L -0.3152
115 P L -0.7072
116 Y L 0.0000
117 T L -0.0413
118 F L 0.1247
119 G L 0.0000
120 G L -0.7772
121 G L 0.0000
122 T L 0.0000
123 K L -0.9274
124 L L 0.0000
125 E L -0.4412
126 L L -0.8480
127 K L -1.7370
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Laboratory of Theory of Biopolymers 2018