Project name: 4_rank

Status: done

Started: 2026-04-28 14:01:35
Settings
Chain sequence(s) B: PIPHNRFGLKAYLRKNFDEEYVNEIVEEMEKEIAEVTKDLPPDAKLSRDQYHQINIIEFHYQQRVEWELRN
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:05)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:06)
Show buried residues

Minimal score value
-4.7903
Maximal score value
1.2235
Average score
-1.8056
Total score value
-128.1977

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 P B -0.4368
2 I B -0.6347
3 P B -0.4907
4 H B -1.0262
5 N B -0.5338
6 R B -0.3147
7 F B 1.2235
8 G B 0.3029
9 L B 0.0000
10 K B -0.8688
11 A B -0.9570
12 Y B -1.1076
13 L B 0.0000
14 R B -3.7954
15 K B -3.5206
16 N B -2.7146
17 F B -3.0034
18 D B -4.0892
19 E B -4.7903
20 E B -4.0287
21 Y B -3.2570
22 V B 0.0000
23 N B -4.4418
24 E B -4.1309
25 I B 0.0000
26 V B -3.3262
27 E B -4.6060
28 E B -4.5608
29 M B 0.0000
30 E B -4.0156
31 K B -4.5234
32 E B -3.7578
33 I B 0.0000
34 A B -2.8711
35 E B -3.5549
36 V B -1.9855
37 T B -1.8721
38 K B -3.3517
39 D B -2.6671
40 L B -1.4779
41 P B -1.5401
42 P B -1.6960
43 D B -2.2453
44 A B -1.8352
45 K B -2.0418
46 L B -1.2662
47 S B -1.7016
48 R B -2.8636
49 D B -2.8740
50 Q B -1.8376
51 Y B -0.7628
52 H B -1.7665
53 Q B -1.2896
54 I B 0.0000
55 N B -0.5423
56 I B 0.4261
57 I B 0.0000
58 E B 0.0000
59 F B -0.0313
60 H B -0.9240
61 Y B 0.0000
62 Q B -1.4280
63 Q B -2.1578
64 R B -1.9777
65 V B 0.0000
66 E B -2.3971
67 W B -1.5063
68 E B -2.1035
69 L B -1.8126
70 R B -2.5479
71 N B -2.2891
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018