Project name: 6b5ef6caeedd553

Status: done

Started: 2024-07-09 02:37:23
Settings
Chain sequence(s) A: DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR
H: EVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKGLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGTLVTVSSASTKGPSVFPLAPSSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
B: EVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKGLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGTLVTVSSASTKGPSVFPLAPSSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
L: DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR
input PDB
Selected Chain(s) A,B,H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:06:46)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:55)
Show buried residues

Minimal score value
-3.9368
Maximal score value
3.0612
Average score
-0.643
Total score value
-551.6785

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D L -2.2751
2 I L 0.0000
3 Q L -2.3080
4 M L 0.0000
5 T L -1.4133
6 Q L 0.0000
7 S L -0.6700
8 P L -0.5381
9 S L -0.7446
10 S L -0.6691
11 L L -0.4911
12 S L -0.8268
13 A L 0.0000
14 S L -1.0385
15 V L -0.3571
16 G L -0.9895
17 D L -2.0771
18 R L -2.4258
19 V L 0.0000
20 T L -0.6642
21 I L 0.0000
22 T L -0.8248
23 C L 0.0000
24 R L -2.9097
25 A L 0.0000
26 S L -2.4247
27 Q L -3.0452
28 D L -2.8431
29 V L 0.0000
30 S L -0.8622
31 T L -0.1844
32 A L 0.0000
33 V L 0.0000
34 A L 0.0000
35 W L 0.0000
36 Y L 0.0000
37 Q L 0.0000
38 Q L 0.0000
39 K L -1.6658
40 P L -1.5065
41 G L -1.6655
42 K L -2.4662
43 A L -1.5508
44 P L 0.0000
45 K L -1.2833
46 L L 0.0000
47 L L 0.0000
48 I L 0.0000
49 Y L 0.9486
50 S L 0.0000
51 A L 0.0000
52 S L 0.6559
53 F L 1.9132
54 L L 1.3454
55 Y L 0.6339
56 S L 0.0686
57 G L -0.3685
58 V L -0.1745
59 P L -0.2659
60 S L -0.3790
61 R L -0.7207
62 F L 0.0000
63 S L 0.1102
64 G L 0.1701
65 S L -0.3698
66 G L -0.7586
67 S L -1.0086
68 G L -1.7503
69 T L -2.2269
70 D L -2.3026
71 F L 0.0000
72 T L -0.7145
73 L L 0.0000
74 T L -0.6245
75 I L 0.0000
76 S L -1.4237
77 S L -1.2601
78 L L 0.0000
79 Q L -0.9789
80 P L -1.5799
81 E L -1.8881
82 D L 0.0000
83 F L -1.1634
84 A L 0.0000
85 T L -0.7585
86 Y L 0.0000
87 Y L 0.0000
88 C L 0.0000
89 Q L 0.0000
90 Q L 0.0000
91 S L 0.0000
92 Y L 0.5685
93 T L -0.4041
94 T L -0.2096
95 P L -0.5790
96 P L 0.0000
97 T L -0.4985
98 F L 0.0000
99 G L 0.0000
100 Q L -1.5577
101 G L 0.0000
102 T L 0.0000
103 K L -1.3329
104 V L 0.0000
105 E L -1.2139
106 I L 0.0000
107 K L -1.4602
108 R L -0.8364
109 T L -0.0876
110 V L 0.4416
111 A L -0.0349
112 A L -0.0991
113 P L 0.0000
114 S L -0.1037
115 V L 0.0000
116 F L 0.2120
117 I L 0.1321
118 F L 0.0000
119 P L -0.7255
120 P L 0.0000
121 S L 0.0000
122 D L -2.6560
123 E L -2.1866
124 Q L 0.0000
125 L L -1.9688
126 K L -2.5118
127 S L -1.5485
128 G L -1.0927
129 T L -0.8586
130 A L 0.0000
131 S L 0.0000
132 V L 0.0000
133 V L 0.0000
134 C L 0.0000
135 L L 0.0000
136 L L 0.0000
137 N L 0.0000
138 N L -0.8464
139 F L 0.0000
140 Y L 0.0000
141 P L -1.6614
142 R L -2.8850
143 E L -3.1485
144 A L -2.3839
145 K L -2.4982
146 V L -1.3155
147 Q L -0.8381
148 W L 0.0000
149 K L -0.7241
150 V L 0.0000
151 D L -1.8577
152 N L -1.5709
153 A L -0.3131
154 L L 0.6104
155 Q L -0.2266
156 S L -0.5088
157 G L -0.9635
158 N L -0.9254
159 S L -1.2837
160 Q L -1.5511
161 E L -1.5691
162 S L -0.9309
163 V L -0.7466
164 T L 0.0000
165 E L -2.2140
166 Q L 0.0000
167 D L -2.1471
168 S L -2.2656
169 K L -2.6188
170 D L -1.8864
171 S L 0.0000
172 T L 0.0000
173 Y L 0.0000
174 S L 0.0000
175 L L 0.0000
176 S L 0.0000
177 S L 0.0000
178 T L -0.6805
179 L L 0.0000
180 T L -0.4771
181 L L -0.6095
182 S L -0.9882
183 K L -1.9950
184 A L -1.9499
185 D L -2.6007
186 Y L 0.0000
187 E L -3.9253
188 K L -3.8361
189 H L -3.5197
190 K L -3.8282
191 V L -2.1713
192 Y L 0.0000
193 A L 0.0000
194 C L 0.0000
195 E L -0.7350
196 V L 0.0000
197 T L -1.2448
198 H L 0.0000
199 Q L -1.7020
200 G L -0.4146
201 L L -0.2821
202 S L -0.4975
203 S L -0.4764
204 P L -0.5871
205 V L -0.0722
206 T L -0.4865
207 K L -0.6043
208 S L -0.6470
209 F L -1.2485
210 N L -2.7015
211 R L -3.5183
1 E H -2.0319
2 V H -1.0393
3 Q H -1.2536
4 L H 0.0000
5 V H 0.3788
6 E H 0.0000
7 S H -0.5174
8 G H -0.8063
9 G H -0.4063
10 G H -0.0096
11 L H 0.0274
12 V H -0.5970
13 Q H -1.5489
14 P H -1.7429
15 G H -1.5954
16 G H -1.3186
17 S H -1.4236
18 L H -1.3039
19 R H -2.0567
20 L H 0.0000
21 S H -0.4812
22 C H 0.0000
23 A H -0.3520
24 A H 0.0000
25 S H -0.8161
26 G H -1.0930
27 F H -0.7106
28 T H -0.8455
29 I H 0.0000
30 S H -1.1004
31 D H -1.7105
32 Y H -0.2019
33 W H 0.2765
34 I H 0.0000
35 H H 0.0000
36 W H 0.0000
37 V H 0.0000
38 R H 0.0000
39 Q H -0.9271
40 A H -1.2351
41 P H -1.2683
42 G H -1.5710
43 K H -2.3778
44 G H -1.6509
45 L H 0.0000
46 E H -1.2903
47 W H 0.0000
48 V H 0.0000
49 A H 0.0000
50 G H 0.0000
51 I H 0.7622
52 T H 0.0000
53 P H 0.3937
54 A H -0.0146
55 G H -0.3659
56 G H -0.0950
57 Y H 0.6359
58 T H 0.6130
59 Y H 0.1261
60 Y H -0.7114
61 A H -1.4397
62 D H -2.4121
63 S H -1.7610
64 V H 0.0000
65 K H -2.5508
66 G H -1.8483
67 R H -1.7001
68 F H 0.0000
69 T H -0.9245
70 I H -0.0601
71 S H -0.2184
72 A H -0.5367
73 D H -1.2101
74 T H -1.3618
75 S H -1.3585
76 K H -2.1414
77 N H -1.4509
78 T H 0.0000
79 A H 0.0000
80 Y H 0.0000
81 L H 0.0000
82 Q H -1.6969
83 M H 0.0000
84 N H -2.2566
85 S H -1.5908
86 L H 0.0000
87 R H -2.5999
88 A H -1.8491
89 E H -2.3623
90 D H 0.0000
91 T H -0.7628
92 A H 0.0000
93 V H -0.0142
94 Y H 0.0000
95 Y H 0.0000
96 C H 0.0000
97 A H 0.0000
98 R H 0.0000
99 F H 0.0000
100 V H 0.0000
101 F H 3.0612
102 F H 2.9899
103 L H 2.1521
104 P H 1.8626
105 Y H 1.3770
106 A H 0.0000
107 M H 0.0000
108 D H 0.0000
109 Y H -0.0778
110 W H -0.2707
111 G H 0.0000
112 Q H -1.4219
113 G H -0.7024
114 T H -0.0616
115 L H 0.2051
116 V H 0.0000
117 T H 0.0000
118 V H 0.0000
119 S H -0.9264
120 S H -0.6769
121 A H -0.4587
122 S H -0.5998
123 T H -0.8587
124 K H -1.4122
125 G H -1.4787
126 P H 0.0000
127 S H -0.3922
128 V H 0.0000
129 F H 0.0000
130 P H -1.1595
131 L H 0.0000
132 A H -1.1504
133 P H 0.0000
134 S H -0.5461
135 S H -0.1482
141 G H -0.6307
142 T H -0.4745
143 A H -0.2407
144 A H 0.0000
145 L H 0.0000
146 G H 0.0000
147 C H 0.0000
148 L H 0.0000
149 V H 0.0000
150 K H 0.0000
151 D H -0.4754
152 Y H 0.0000
153 F H 0.0000
154 P H 0.0000
155 E H -0.8597
156 P H -0.8903
157 V H -0.7755
158 T H -0.6594
159 V H -0.2391
160 S H -0.3143
161 W H 0.0000
162 N H -0.7301
163 S H -0.6142
164 G H -0.5713
165 A H -0.2638
166 L H -0.0134
167 T H -0.1600
168 S H -0.1487
169 G H -0.0989
170 V H 0.1862
171 H H -0.3352
172 T H -0.1948
173 F H 0.0000
174 P H -0.2869
175 A H 0.2503
176 V H 0.6286
177 L H 1.2721
178 Q H 0.2698
179 S H -0.0348
180 S H -0.1967
181 G H 0.0041
182 L H 0.0367
183 Y H 0.4063
184 S H 0.1830
185 L H 0.0000
186 S H 0.0000
187 S H 0.0000
188 V H 0.0000
189 V H 0.0000
190 T H -0.1252
191 V H 0.0000
192 P H -0.6022
193 S H -0.5036
194 S H -0.6129
195 S H -0.6606
196 L H -0.9401
197 G H -1.2573
198 T H -1.0573
199 Q H -1.6150
200 T H -1.3214
201 Y H 0.0000
202 I H -1.0757
203 C H 0.0000
204 N H 0.0000
205 V H 0.0000
206 N H -1.9505
207 H H 0.0000
208 K H -2.7681
209 P H -1.6658
210 S H -1.8920
211 N H -2.5510
212 T H -2.1139
213 K H -2.5154
214 V H -1.2751
215 D H -1.9265
216 K H -1.7044
217 K H -2.4245
218 V H 0.0000
219 E H -2.8955
220 P H -1.6754
221 K H -1.9415
222 S H -0.7486
223 C H 0.1176
1 D A -2.2462
2 I A 0.0000
3 Q A -2.2653
4 M A 0.0000
5 T A -1.3905
6 Q A 0.0000
7 S A -0.6944
8 P A -0.6580
9 S A -0.9163
10 S A -1.0190
11 L A -0.7054
12 S A -0.9138
13 A A 0.0000
14 S A -0.9059
15 V A -0.1973
16 G A -0.7525
17 D A -1.8463
18 R A -2.3159
19 V A 0.0000
20 T A -0.6824
21 I A 0.0000
22 T A -0.7952
23 C A 0.0000
24 R A -2.8621
25 A A 0.0000
26 S A -2.3552
27 Q A -2.9902
28 D A -2.8475
29 V A 0.0000
30 S A -0.9267
31 T A -0.3121
32 A A 0.0000
33 V A 0.0000
34 A A 0.0000
35 W A 0.0000
36 Y A 0.0000
37 Q A 0.0000
38 Q A 0.0000
39 K A -1.7757
40 P A -1.4223
41 G A -1.6312
42 K A -2.4567
43 A A -1.5686
44 P A 0.0000
45 K A -1.3745
46 L A 0.0000
47 L A 0.0000
48 I A 0.0000
49 Y A 1.0057
50 S A 0.0000
51 A A 0.0000
52 S A 0.8131
53 F A 2.2069
54 L A 1.4288
55 Y A 0.6659
56 S A 0.0554
57 G A -0.4803
58 V A 0.0000
59 P A -0.4086
60 S A -0.4660
61 R A -0.8383
62 F A 0.0000
63 S A 0.1284
64 G A 0.2504
65 S A -0.3340
66 G A -0.7511
67 S A -1.0180
68 G A -1.7795
69 T A -2.2104
70 D A -2.2145
71 F A 0.0000
72 T A -0.7050
73 L A 0.0000
74 T A -0.6431
75 I A 0.0000
76 S A -1.3976
77 S A -1.2112
78 L A 0.0000
79 Q A -1.0680
80 P A -1.5855
81 E A -2.0077
82 D A 0.0000
83 F A -1.3145
84 A A 0.0000
85 T A -1.0169
86 Y A 0.0000
87 Y A 0.0000
88 C A 0.0000
89 Q A 0.0000
90 Q A 0.0000
91 S A 0.0000
92 Y A 0.4872
93 T A -0.2801
94 T A -0.1643
95 P A -0.5019
96 P A 0.0000
97 T A -0.5258
98 F A 0.0000
99 G A 0.0000
100 Q A -1.5399
101 G A 0.0000
102 T A 0.0000
103 K A -1.9740
104 V A 0.0000
105 E A -1.4576
106 I A 0.0000
107 K A -1.4046
108 R A -0.8204
109 T A -0.0202
110 V A 0.4292
111 A A -0.0086
112 A A -0.0921
113 P A 0.0000
114 S A -0.1582
115 V A 0.0000
116 F A 0.0868
117 I A 0.0518
118 F A 0.0000
119 P A -0.7354
120 P A -1.0007
121 S A 0.0000
122 D A -3.1924
123 E A -3.1114
124 Q A 0.0000
125 L A 0.0000
126 K A -2.8841
127 S A -1.7545
128 G A -1.2876
129 T A -0.9378
130 A A 0.0000
131 S A 0.0000
132 V A 0.0000
133 V A 0.0000
134 C A 0.0000
135 L A 0.0000
136 L A 0.0000
137 N A 0.0000
138 N A -0.9328
139 F A 0.0000
140 Y A 0.0000
141 P A -1.7790
142 R A -3.1090
143 E A -3.2565
144 A A -2.3616
145 K A -2.3999
146 V A -0.9827
147 Q A -0.4852
148 W A 0.0000
149 K A -0.5429
150 V A 0.0000
151 D A -1.8494
152 N A -1.3522
153 A A -0.2547
154 L A 0.6605
155 Q A -0.3309
156 S A -0.6556
157 G A -1.2114
158 N A -1.4798
159 S A -1.4082
160 Q A -1.4668
161 E A -1.9215
162 S A -1.0508
163 V A -0.8968
164 T A 0.0000
165 E A -2.1885
166 Q A 0.0000
167 D A -2.0221
168 S A -2.1980
169 K A -2.5953
170 D A -1.9525
171 S A 0.0000
172 T A 0.0000
173 Y A -1.3762
174 S A 0.0000
175 L A 0.0000
176 S A 0.0000
177 S A 0.0000
178 T A -0.7551
179 L A 0.0000
180 T A -0.5996
181 L A -0.5983
182 S A -1.1130
183 K A -2.1786
184 A A -2.0002
185 D A -2.6470
186 Y A 0.0000
187 E A -3.9368
188 K A -3.7689
189 H A -3.3415
190 K A -3.5736
191 V A -1.9746
192 Y A 0.0000
193 A A 0.0000
194 C A 0.0000
195 E A -0.6327
196 V A 0.0000
197 T A -1.1612
198 H A 0.0000
199 Q A -1.7141
200 G A -0.4539
201 L A -0.2957
202 S A -0.4935
203 S A -0.4378
204 P A -0.4968
205 V A 0.0518
206 T A -0.4432
207 K A -0.7832
208 S A -0.7125
209 F A -1.3119
210 N A -2.6568
211 R A -3.4249
1 E B -1.9913
2 V B -1.0906
3 Q B -1.1018
4 L B 0.0000
5 V B 0.4414
6 E B 0.0000
7 S B -0.5428
8 G B -0.9340
9 G B -0.4828
10 G B 0.0247
11 L B 0.0417
12 V B -0.6100
13 Q B -1.5977
14 P B -1.8003
15 G B -1.6014
16 G B -1.2696
17 S B -1.5843
18 L B -1.2391
19 R B -2.3414
20 L B 0.0000
21 S B -0.5271
22 C B 0.0000
23 A B -0.3160
24 A B 0.0000
25 S B -0.7369
26 G B -1.0282
27 F B -0.6637
28 T B -0.8257
29 I B 0.0000
30 S B -1.1088
31 D B -1.6824
32 Y B -0.1515
33 W B 0.3606
34 I B 0.0000
35 H B 0.0000
36 W B 0.0000
37 V B 0.0000
38 R B 0.0000
39 Q B -0.9888
40 A B -1.2378
41 P B -1.2091
42 G B -1.5651
43 K B -2.3714
44 G B -1.6532
45 L B 0.0000
46 E B -1.3862
47 W B 0.0000
48 V B 0.0000
49 A B 0.0000
50 G B 0.0000
51 I B 1.1030
52 T B 0.0000
53 P B 0.5005
54 A B 0.0955
55 G B -0.0915
56 G B 0.3011
57 Y B 1.3412
58 T B 1.0604
59 Y B 0.5722
60 Y B -0.5177
61 A B -1.4273
62 D B -2.4166
63 S B -1.8307
64 V B 0.0000
65 K B -2.5444
66 G B -1.8861
67 R B -1.7140
68 F B 0.0000
69 T B -0.9278
70 I B -0.1012
71 S B -0.2667
72 A B -0.6358
73 D B -1.3950
74 T B -1.4363
75 S B -1.3888
76 K B -2.1815
77 N B -1.4636
78 T B 0.0000
79 A B 0.0000
80 Y B 0.0000
81 L B 0.0000
82 Q B -1.8076
83 M B 0.0000
84 N B -2.2634
85 S B -1.6080
86 L B 0.0000
87 R B -2.5859
88 A B -1.8250
89 E B -2.3324
90 D B 0.0000
91 T B -0.7725
92 A B 0.0000
93 V B -0.0616
94 Y B 0.0000
95 Y B 0.0000
96 C B 0.0000
97 A B 0.0000
98 R B 0.0000
99 F B 0.0000
100 V B 0.0000
101 F B 3.0609
102 F B 2.9810
103 L B 2.1483
104 P B 1.8819
105 Y B 1.3674
106 A B 0.0000
107 M B 0.0000
108 D B 0.0000
109 Y B -0.0679
110 W B -0.2437
111 G B 0.0000
112 Q B -1.4285
113 G B -0.7425
114 T B -0.1998
115 L B 0.2397
116 V B 0.0000
117 T B -0.4126
118 V B 0.0000
119 S B -0.7495
120 S B -0.6975
121 A B -0.5132
122 S B -0.7059
123 T B -1.0254
124 K B -1.7058
125 G B -1.6159
126 P B -0.8059
127 S B -0.5804
128 V B 0.0000
129 F B 0.0000
130 P B -1.3241
131 L B 0.0000
132 A B -0.9416
133 P B 0.0000
134 S B -0.5353
135 S B -0.2036
141 G B -0.6223
142 T B -0.4549
143 A B -0.2501
144 A B 0.0000
145 L B 0.0000
146 G B 0.0000
147 C B 0.0000
148 L B 0.0000
149 V B 0.0000
150 K B -0.3326
151 D B -0.6175
152 Y B 0.0000
153 F B 0.0000
154 P B 0.0000
155 E B -0.5957
156 P B -0.6788
157 V B -0.6669
158 T B -0.6308
159 V B -0.3690
160 S B -0.3990
161 W B 0.0000
162 N B -0.8034
163 S B -0.6803
164 G B -0.5924
165 A B -0.2631
166 L B -0.0031
167 T B -0.1851
168 S B -0.1863
169 G B -0.2411
170 V B 0.1667
171 H B -0.3165
172 T B -0.1605
173 F B 0.0000
174 P B -0.3280
175 A B 0.1991
176 V B 0.5217
177 L B 1.2587
178 Q B 0.2876
179 S B -0.1942
180 S B -0.2313
181 G B -0.0273
182 L B 0.0857
183 Y B 0.3664
184 S B 0.0000
185 L B 0.0000
186 S B 0.0000
187 S B 0.0000
188 V B 0.0000
189 V B 0.0000
190 T B -0.1459
191 V B 0.0000
192 P B -0.4831
193 S B -0.5356
194 S B -0.6151
195 S B -0.6680
196 L B -0.9708
197 G B -1.4165
198 T B -1.0899
199 Q B -1.5861
200 T B -1.2849
201 Y B 0.0000
202 I B -1.1616
203 C B 0.0000
204 N B -1.5586
205 V B 0.0000
206 N B -2.0596
207 H B 0.0000
208 K B -2.7536
209 P B -1.6868
210 S B -1.9726
211 N B -2.6411
212 T B -2.1836
213 K B -2.7365
214 V B -1.6050
215 D B -2.6575
216 K B -2.2047
217 K B -2.6187
218 V B 0.0000
219 E B -2.9159
220 P B -1.7131
221 K B -2.1974
222 S B -0.8281
223 C B 0.0306
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Laboratory of Theory of Biopolymers 2018