Project name: query_structure

Status: done

Started: 2026-03-16 23:39:59
Settings
Chain sequence(s) A: QWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSK
C: SVPTKLEVVAATPTSLLISWDPAVTVVHYVITYGETGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAIDFYWGSYSPISINYRT
B: QWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSS
D: SVTKLLLISWDAPATVVHYVITEFTVPGSKSTATISTVYAIDFYWGSYSPIS
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:10:23)
[INFO]       Main:     Simulation completed successfully.                                          (00:10:28)
Show buried residues

Minimal score value
-3.5309
Maximal score value
2.5382
Average score
-0.6675
Total score value
-422.5418

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
127 Q A -1.0646
128 W A -0.4313
129 A A -0.5284
130 L A -0.5083
131 E A -2.0308
132 D A -2.2055
133 F A 0.0000
134 E A -2.2126
135 I A -0.5365
136 G A -1.0397
137 R A -1.5889
138 P A -0.9403
139 L A -0.3909
140 G A -1.1033
141 K A -2.2712
142 G A -1.9740
143 K A -2.3546
144 F A 0.0000
145 G A 0.0000
146 N A -1.0579
147 V A -0.4097
148 Y A -0.3553
149 L A -0.0162
150 A A 0.0000
151 R A -0.8834
152 E A 0.0000
153 K A -3.0930
154 Q A -2.2377
155 S A -1.2828
156 K A -1.8040
157 F A 1.0197
158 I A 1.1897
159 L A 0.0000
160 A A 0.0000
161 L A 0.0000
162 K A -0.3563
163 V A 0.0000
164 L A 0.0000
165 F A -0.3616
166 K A -1.0619
167 A A -1.1974
168 Q A -1.8735
169 L A 0.0000
170 E A -3.0049
171 K A -3.0995
172 A A 0.0000
173 G A -2.0325
174 V A 0.0000
175 E A -1.4742
176 H A -1.2045
177 Q A -1.1704
178 L A 0.0000
179 R A 0.0000
180 R A -0.8170
181 E A -0.5058
182 V A 0.0000
183 E A 0.0000
184 I A 0.0000
185 Q A -0.8145
186 S A -0.8841
187 H A -1.6741
188 L A 0.0000
189 R A -2.2414
190 H A -1.3220
191 P A -0.9273
192 N A 0.0000
193 I A 0.0000
194 L A 0.0000
195 R A -0.9249
196 L A 0.0000
197 Y A 0.1997
198 G A 0.2262
199 Y A 0.2082
200 F A 0.0000
201 H A 0.0000
202 D A -0.6066
203 A A -0.4547
204 T A -0.5144
205 R A -0.7826
206 V A 0.0000
207 Y A 0.0000
208 L A 0.0000
209 I A 0.0000
210 L A 0.3016
211 E A 0.1007
212 Y A 0.7978
213 A A 0.3714
214 P A 0.5503
215 L A 0.9006
216 G A 0.0990
217 T A -0.5236
218 V A 0.0000
219 Y A -1.1995
220 R A -2.5138
221 E A -1.8589
222 L A 0.0000
223 Q A -2.5083
224 K A -2.5558
225 L A -1.0206
226 S A -1.1006
227 K A -1.6427
228 F A 0.0000
229 D A -2.7763
230 E A -2.2655
231 Q A -2.3919
232 R A -2.0241
233 T A 0.0000
234 A A 0.0000
235 T A -1.3878
236 Y A 0.0000
237 I A 0.0000
238 T A 0.0000
239 E A -0.7824
240 L A 0.0000
241 A A 0.0000
242 N A -0.6922
243 A A 0.0000
244 L A 0.0000
245 S A -0.6164
246 Y A -0.6408
247 C A 0.0000
248 H A 0.0000
249 S A -1.2596
250 K A -2.1704
251 R A -2.6354
252 V A 0.0000
253 I A 0.0000
254 H A -1.0726
255 R A -1.0160
256 D A -1.4413
257 I A 0.0000
258 K A 0.0000
259 P A 0.0000
260 E A -1.5300
261 N A -0.8724
262 L A 0.0000
263 L A -0.0645
264 L A 0.0000
265 G A 0.0000
266 S A -0.0227
267 A A -0.1044
268 G A -0.2205
269 E A -0.4904
270 L A 0.0000
271 K A -0.4234
272 I A 0.0000
273 A A -0.4380
274 D A -0.3686
275 F A 0.5706
291 G A -0.8561
292 T A -0.5628
293 L A 0.0000
294 D A -0.7821
295 Y A 0.0000
296 L A 0.0000
297 P A 0.0000
298 P A 0.0000
299 E A 0.0000
300 M A 0.0000
301 I A 0.0000
302 E A -1.0226
303 G A 0.0000
304 R A -1.7505
305 M A -1.1525
306 H A -0.9692
307 D A -1.4976
308 E A -1.3211
309 K A -0.9183
310 V A 0.0000
311 D A 0.0000
312 L A 0.0000
313 W A 0.0000
314 S A -0.3089
315 L A 0.0000
316 G A 0.0000
317 V A 0.0000
318 L A 0.0000
319 C A 0.0000
320 Y A 0.0000
321 E A 0.0000
322 F A 0.0000
323 L A 0.0000
324 V A -0.2053
325 G A -1.1496
326 K A -1.7814
327 P A 0.0000
328 P A 0.0000
329 F A 0.0000
330 E A -2.0207
331 A A -1.7954
332 N A -1.7584
333 T A -1.4209
334 Y A 0.0000
335 Q A -2.1835
336 E A -2.8218
337 T A 0.0000
338 Y A -1.8996
339 K A -2.9892
340 R A -2.7936
341 I A 0.0000
342 S A 0.0000
343 R A -2.8701
344 V A -1.9794
345 E A -2.5419
346 F A -0.8708
347 T A -0.3826
348 F A -0.1036
349 P A -0.2528
350 D A -0.9295
351 F A 0.7006
352 V A 0.0000
353 T A -1.2073
354 E A -2.2832
355 G A -1.8042
356 A A 0.0000
357 R A -2.0487
358 D A -2.6333
359 L A 0.0000
360 I A 0.0000
361 S A -1.1890
362 R A -1.7471
363 L A 0.0000
364 L A 0.0000
365 K A -1.7736
366 H A -1.8124
367 N A -1.6973
368 P A -1.4786
369 S A -1.2033
370 Q A -1.7996
371 R A 0.0000
372 P A 0.0000
373 M A -0.6098
374 L A 0.0000
375 R A -2.8494
376 E A -2.9608
377 V A 0.0000
378 L A -2.1450
379 E A -2.9095
380 H A -2.0373
381 P A -1.1550
382 W A 0.0000
383 I A 0.0000
384 T A -1.0722
385 A A -0.6716
386 N A -1.4150
387 S A -1.2645
388 S A -1.4037
389 K A -1.9008
127 Q B -1.0363
128 W B -0.4299
129 A B -0.5867
130 L B -0.6288
131 E B -2.2157
132 D B -2.5271
133 F B 0.0000
134 E B -2.5990
135 I B -0.5747
136 G B -0.8273
137 R B -1.4691
138 P B -0.8906
139 L B -0.2719
140 G B -1.0358
141 K B -2.2709
142 G B -2.0983
143 K B -2.6634
144 F B -1.0481
145 G B -1.0975
146 N B -1.1611
147 V B -0.3962
148 Y B -0.3804
149 L B -0.2475
150 A B 0.0000
151 R B -1.9924
152 E B -2.5128
153 K B -3.5309
154 Q B -2.7800
155 S B -1.7880
156 K B -2.4368
157 F B -0.1866
158 I B 0.3277
159 L B 0.0000
160 A B 0.0000
161 L B 0.0000
162 K B -0.4219
163 V B 0.0000
164 L B 0.0000
165 F B -0.0772
166 K B 0.0000
167 A B -0.6369
168 Q B -1.3141
169 L B 0.0000
170 E B -2.1006
171 K B -2.2594
172 A B -1.5998
173 G B -1.3420
174 V B -0.7753
175 E B 0.0000
176 H B -0.9060
177 Q B -0.8565
178 L B 0.0000
179 R B -0.6022
180 R B -0.9412
181 E B 0.0000
182 V B 0.0000
183 E B -1.3072
184 I B 0.0000
185 Q B 0.0000
186 S B -1.4042
187 H B -1.7916
188 L B 0.0000
189 R B -2.5100
190 H B -1.4976
191 P B -1.2003
192 N B -1.0214
193 I B 0.0000
194 L B 0.0000
195 R B -2.0441
196 L B 0.0000
197 Y B 0.0552
198 G B -0.0472
199 Y B 0.3013
200 F B 0.0000
201 H B -0.3998
202 D B -0.8541
203 A B -0.4589
204 T B -0.3643
205 R B -0.7861
206 V B 0.0000
207 Y B 0.0000
208 L B 0.0000
209 I B 0.0000
210 L B 0.0000
211 E B -0.4691
212 Y B 0.3222
213 A B 0.3245
214 P B 0.5359
215 L B 0.8503
216 G B 0.1841
217 T B -0.3714
218 V B 0.0000
219 Y B -1.1269
220 R B -2.0649
221 E B -1.7169
222 L B 0.0000
223 Q B -2.6176
224 K B -2.3684
225 L B -1.0315
226 S B -1.5823
227 K B -2.2867
228 F B 0.0000
229 D B -2.6836
230 E B -2.2058
231 Q B -2.2913
232 R B -1.9384
233 T B 0.0000
234 A B 0.0000
235 T B -0.7828
236 Y B 0.0000
237 I B 0.0000
238 T B -0.7138
239 E B -0.5915
240 L B 0.0000
241 A B 0.0000
242 N B -0.7224
243 A B 0.0000
244 L B 0.0000
245 S B -0.7488
246 Y B -0.6877
247 C B 0.0000
248 H B 0.0000
249 S B -1.1280
250 K B -2.0895
251 R B -2.3869
252 V B 0.0000
253 I B 0.0000
254 H B -0.8148
255 R B 0.0000
256 D B -0.4466
257 I B 0.0000
258 K B -0.5991
259 P B 0.0000
260 E B -1.1289
261 N B -0.5377
262 L B 0.0000
263 L B -0.0384
264 L B 0.0000
265 G B 0.0000
266 S B -0.0220
267 A B -0.0859
268 G B -0.1911
269 E B -0.5220
270 L B 0.0000
271 K B -0.7152
272 I B 0.0000
273 A B 0.0000
274 D B -0.1675
275 F B 0.2386
291 G B -0.6787
292 T B -0.4850
293 L B 0.0000
294 D B -0.8014
295 Y B 0.0000
296 L B 0.0159
297 P B 0.0000
298 P B 0.0000
299 E B 0.0000
300 M B -0.1061
301 I B 0.0000
302 E B -0.7853
303 G B 0.0000
304 R B -1.3383
305 M B -0.9930
306 H B -0.7942
307 D B -1.2547
308 E B -1.1524
309 K B -0.9146
310 V B 0.0000
311 D B 0.0000
312 L B 0.0000
313 W B 0.0000
314 S B 0.0000
315 L B 0.0000
316 G B 0.0000
317 V B 0.0000
318 L B 0.0000
319 C B 0.0000
320 Y B 0.0000
321 E B 0.0000
322 F B 0.0000
323 L B 0.0000
324 V B -0.7506
325 G B -1.3649
326 K B -2.0386
327 P B 0.0000
328 P B 0.0000
329 F B 0.0000
330 E B -1.7643
331 A B -1.4937
332 N B -1.3360
333 T B -1.0431
334 Y B 0.0000
335 Q B -1.4512
336 E B -2.2684
337 T B 0.0000
338 Y B 0.0000
339 K B -2.5133
340 R B -2.4580
341 I B 0.0000
342 S B -1.6905
343 R B -2.5634
344 V B -1.4308
345 E B -1.6720
346 F B -0.3993
347 T B -0.1430
348 F B 0.0719
349 P B -0.2800
350 D B -1.1275
351 F B 0.5779
352 V B 0.0000
353 T B -1.0899
354 E B -2.2633
355 G B -1.4629
356 A B 0.0000
357 R B -1.7550
358 D B -1.8311
359 L B 0.0000
360 I B 0.0000
361 S B -1.1086
362 R B -1.7481
363 L B 0.0000
364 L B 0.0000
365 K B -1.6851
366 H B -1.5616
367 N B -1.6381
368 P B -1.4024
369 S B -1.2675
370 Q B -1.9177
371 R B 0.0000
372 P B -1.3068
373 M B -1.0599
374 L B 0.0000
375 R B -3.0919
376 E B -3.2149
377 V B 0.0000
378 L B -2.0428
379 E B -2.9400
380 H B 0.0000
381 P B -1.0020
382 W B 0.0000
383 I B 0.0000
384 T B -0.7664
385 A B -0.6003
386 N B -1.1269
387 S B -0.7782
388 S B -0.5860
5 S C -0.5976
6 V C 0.0000
7 P C 0.0000
8 T C -1.3550
9 K C -2.6366
10 L C -1.6170
11 E C -1.6916
12 V C 0.4115
13 V C 1.6192
14 A C 0.9265
15 A C 0.6276
16 T C -0.1562
17 P C -0.7757
18 T C -0.8818
19 S C -0.5048
20 L C 0.0000
21 L C 0.8020
22 I C 0.0000
23 S C -0.8768
24 W C 0.0000
25 D C -2.6533
27 P C -0.7023
28 A C -0.0583
29 V C 0.0989
30 T C 0.0477
31 V C 0.1972
32 V C -0.0214
33 H C -0.4473
34 Y C 0.0000
35 V C 0.0000
36 I C 0.0000
37 T C -0.4734
38 Y C -0.5154
39 G C -1.1696
40 E C -2.5093
41 T C -1.7740
42 G C -1.4338
44 N C -1.6996
45 S C -1.0501
46 P C -0.4438
47 V C 0.1738
48 Q C -1.0508
49 E C -1.6591
50 F C -0.5686
51 T C -0.2474
52 V C 0.0000
53 P C -0.9106
54 G C -0.8428
55 S C -1.1078
56 K C -1.9396
57 S C -1.4982
58 T C -0.7513
59 A C 0.0000
60 T C 0.0758
61 I C 0.0000
62 S C -0.6234
63 G C -0.9472
64 L C -1.3177
65 K C -2.4578
66 P C -1.7407
67 G C -1.4672
68 V C 0.0000
69 D C -2.2456
70 Y C -1.8718
71 T C -1.0063
72 I C 0.0000
73 T C -0.2162
74 V C 0.0000
75 Y C 0.1229
76 A C 0.0000
77 I C 0.1793
78 D C 0.0000
79 F C -0.0969
80 Y C -0.0771
81 W C 0.0000
82 G C -0.2116
83 S C -0.1471
84 Y C 0.0000
85 S C -0.3847
86 P C -0.1958
87 I C -0.0748
88 S C -0.5011
89 I C -0.6043
90 N C -1.8048
91 Y C -1.4963
92 R C -2.6130
93 T C -1.6821
5 S D -0.0259
6 V D -0.0200
8 T D -0.6161
9 K D -1.2137
10 L D 0.8363
20 L D 2.4644
21 L D 2.5382
22 I D 1.4963
23 S D -0.1355
24 W D 0.0000
25 D D -2.3289
26 A D -1.4085
27 P D -0.7210
28 A D -0.4188
30 T D -0.0177
31 V D 0.0000
32 V D 0.2321
33 H D -0.1705
34 Y D 0.0000
35 V D 0.5042
36 I D 0.0000
37 T D -0.3132
49 E D -1.1765
50 F D 0.5010
51 T D 0.3572
52 V D 0.0586
53 P D -0.6301
54 G D -0.7327
55 S D -1.1141
56 K D -2.1990
57 S D -1.6605
58 T D -0.5195
59 A D 0.0000
60 T D 1.3757
61 I D 1.4039
62 S D 0.5069
73 T D 0.5051
74 V D 0.9229
75 Y D 0.7988
76 A D 0.0000
77 I D 0.3759
78 D D 0.1629
79 F D 0.2447
80 Y D 0.0490
81 W D 0.0000
82 G D -0.0953
83 S D 0.0125
84 Y D 0.0000
85 S D 0.1592
86 P D 0.6734
87 I D 1.5181
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018